Home

The 1000 plants (oneKP or 1KP) initiative is an international multi-disciplinary consortium that has generated large-scale gene sequencing data for over 1000 species of plants. Major supporters include Alberta Ministry of Innovation and Advanced Education, Musea Ventures (Somekh Family Foundation), Beijing Genomics Institute in Shenzhen (BGI-Shenzhen), China National GeneBank (CNGB),  iPlant Tree-of-Life (iPToL) Grand Challenge, Compute Canada (Westgrid), and Alberta Innovates Technology Futures (AITF-iCORE Strategic Chair). Sample selection was based on a series of overlapping sub-projects with scientific objectives that could be addressed by the sequencing of multiple plant species . As more collaborators joined 1KP, however, the objectives evolved and are now exemplified by the diverse collection of papers described by the links below.


Our capstone analyses were published 31 Oct 2019 on the cover of Nature.

https://www.nature.com/nature/volumes/574/issues/7780

One Thousand Plant Transcriptomes Initiative. Oct 2019. One thousand plant transcriptomes and the phylogenomics of green plantsNature 574: 679-685

Eric Carpenter, … Gane KS Wong. Oct 2019. Access to RNA-sequencing data from 1173 plant species: The 1000 Plant transcriptomes initiative (1KP)GigaScience 8: giz126


Altimetric Score for 1KP capstone


For reference here is a complete table of plant species/samples sequenced.

Table of sequenced plant samples


Here are some of the most important links to the 1KP data set and analyses.

Raw unassembled reads at the SRA

Cyverse Data Commons repository


Alternatively, for access from within China, the following might load faster.

Blast search engine hosted by CNGB

Access to 1KP data from GigaScience


Here is our list of the papers published and a subset of the media coverage.

Summary of published manuscripts


A review of the project has been published in Annual Review of Plant Biology.

Summary of the last decade for 1KP


The next step is to sequence complete genomes for 10,000 or more species.

Shifeng Cheng, ... Gane KS Wong. Mar 2018. 10KP: A phylodiverse genome sequencing planGigascience 7: 1-9


Dennis Normile's coverage of 10KP


https://www.alberta.ca/index.aspxhttp://www.museaventures.com/https://www.bgi.com/global/