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basic_analysis

The basic analysis of DDBJ pipeline is no longer available. Instead of the basic analysis, the DNApod provides the scripts for the same processes as the basic analysis

Procedure:
1. Download the scripts from this site.
2. Install the required tools.
     bwa v0.6.1
     samtools v0.1.18
3. Edit the local path of bwa, samtools, FASTQ files and reference fast file in the shell scripts "DNApod_basic_analysis.sh".
     BWA=
     SAMTOOLS=
     BCFTOOLS=
     VCFUTILS=

     READ1=
     READ2=
     REFERENCE=

4. Run "DNApod_basic_analysis.sh".
    The result file "unique.var.flt.vcf" is the import file to high-level analysis.
  
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basic_analysis.zip
(9k)
望月孝子,
Jan 3, 2019, 11:21 PM
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