Haplotype inference- X
Li and J Li. Haplotype
Reconstruction in Large Pedigrees with Untyped Individuals through IBD
Inference. Journal of Computational Biology, 18(11):1411-21, 2011. PMID:
21923410. (journal version of RECOMB11 paper).
X
Li, X-L Yin and J Li, Efficient
identification of identical-by-descent status in pedigrees with many untyped
individuals. Bioinformatics 2010 26(12):i191-i198 (ISMB'10 special issue). Li,
X. & Li, J. An almost linear time
algorithm for a general haplotype solution on tree pedigrees with no recombination
and its extensions. Journal of Bioinformatics and Computational Biology
(JBCB), 7(3): 521-545, 2009.
Jing
Li and Tao Jiang. An Exact Solution for Finding
Minimum Recombinant Haplotype Configurations on Pedigrees with Missing Data by
Integer Linear Programming. RECOMB04,
101-110.
Jing
Li and Tao Jiang. Efficient Rule-Based
Haplotyping Algorithm for Pedigree Data. In Proc. 7th Annual Conference on Research
in Computational Molecular Biology (RECOMB03), 197-206.
Association mapping
Structure variation & rare variants
Integration for disease gene ranking & target prediction- W Wang, S Yang and J Li. Drug
Target Predictions Based on Heterogeneous Graph Inference, Pacific
Symposium on Biocomputing, 18:53-64, 2013.
Y
Chen, W Wang, Y Zhou, R Shields, SK Chanda, RC Elston, and J Li. In
Silico Gene Prioritization by Integrating Multiple Data Sources. Plos One
6(6): e21137, 2011.
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