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HPC News

Welcome to HPCC News page. Posts here will bring attention to new improvements or changes to the HPCC as well as new opportunities and sessions for training. Also available is a calendar of events located underneath HPCC News on the left sidebar.

Code Optimization

posted by Sanjaya Gajurel

The new link "Code Optimization @HPC" has been included under Helpful References in HPC website.

Schrödinger Workshop at University of California, San Francisco

posted Jul 1, 2014, 7:53 AM by Sanjaya Gajurel

If you are interested in the workshop register at http://contact.schrodinger.com/acton/form/1250/00b6:d-0001/0/index.htm.

Matlab Coder available at CWRU

posted Jun 12, 2014, 2:06 PM by Hadrian Djohari   [ updated Jun 16, 2014, 1:30 PM ]

Matlab Coder is now available for a CWRU user, including in the HPC cluster. Matlab coder is a very useful tool to convert your Matlab code to a C/C++ codes, either to convert it completely or to use part of the function to merge it with a different code snippet. More information about Matlab Coder on the Mathworks. The manual (preparation, acceleration, code generation) quick start guides for Matlab 2013b can be downloaded from the /usr/local/doc/MATLAB directory.

MitoSeek in HPC

posted Apr 28, 2014, 12:17 PM by Sanjaya Gajurel

Mitoseek-1.2 has been Installed in HPC system. Follow the Mitoseek Guide.

MitoSeek is an open-source software tool to reliably and easily extract mitochondrial genome information from exome sequencing data

Request to Acknowledge HPC in your Research Work

posted Apr 24, 2014, 7:18 AM by Sanjaya Gajurel

We would like to thank those of you who have visited us during the Research Showcase. We also had visitors with the media that we displayed on our big 4-panel viz-wall. 

This is also the reminder for those who used HPC resource for the publications (poster, articles) to acknowledge us with:

"This work made use of the High Performance Computing Resource in the Core Facility for Advanced Research Computing at Case Western Reserve University."

Also, please submit your posters and publications that have not been yet included in this webpage: https://sites.google.com/a/case.edu/hpc-upgraded-cluster/hpcc-assisted-research

Research Computing BOOTH 629 (Research ShowCase 2014)

posted Apr 17, 2014, 2:18 PM by Sanjaya Gajurel

Please stop by at our booth in 629 on April 18, 2014.

Research Computing consists of these following services:
- HPC
- Visualization
- Research Database
- Research Data Management
- Research Collaboration

Experience the 4-panel visualization wall. Interesting simulation to play? Bring the media with you.

See you there

MATLABR2013b Available

posted Apr 14, 2014, 7:37 AM by Sanjaya Gajurel   [ updated Apr 14, 2014, 7:37 AM ]

MATLABR2013b is available in HPC.

Relion is available in HPC now

posted Apr 10, 2014, 10:59 AM by Sanjaya Gajurel

Find the Relion documentation here.

RELION (
http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page) stands for REgularised LIkelihood OptimisatioN and is a program used for cryo-electron microscopy (cryo-EM) processing. The software was developed from Sjors H.W. Schere's Lab at MRC Laboratory of Molecular Biology in Cambridge. So far, the program has been used to resolve large macromolecular cryo-EM structures like ribosomes

Siesta-3.2

posted Mar 31, 2014, 10:55 AM by Sanjaya Gajurel

Siesta-3.2 has been installed in HPC. Find the documentation at https://sites.google.com/a/case.edu/hpc-upgraded-cluster/home/Software-Guide/siesta

SIESTA (http://departments.icmab.es/leem/siesta/) performs efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids. 

OSC Seminars and Fellowship Opportunities

posted Jan 27, 2014, 8:03 AM by S A Meka

Introduction to High Performance Computing at OSC

We are planning to offer our popular introductory workshop on OSC resources just once this semester. This two-and-a-half hour workshop will provide an introduction to OSC resources and how to access them, and is intended for new users or researchers who may not already have accounts but are interested in learning about OSC resources. The workshop will be held at 9:30 a.m. on Thursday, Jan. 23 in BALE Theater at the Ohio Supercomputer Center, 1224 Kinnear Road in Columbus. 

Introduction to Linux/UNIX workshop   

OSC will be offering a workshop for users new to Linux environments, to help you more effectively use our HPC resources. Topics include logging in and out, directory structure, wildcards, paths, file permissions, editors, and more. This workshop will be held on Thursday, Jan. 30 in  BALE Theater at OSC and runs from 1:30-4 p.m. 

XSEDE HPC Monthly Workshop - Big Data

XSEDE and the Pittsburgh Supercomputing Center will be presenting a one-day "Big Data" workshop onFeb. 4, from 11 a.m. to 5 p.m. Users from around the country will be able to participate in this workshop by registering to attend at their nearest partner site. OSC will be one of those sites. Please visit the XSEDE Portal for more information on this class and to register. You can elect to attend the closest locations in Pittsburgh (Pittsburgh Supercomputing Center) or in Columbus (OSC). XSEDE account is free.

XSEDE14 Call for Participation

The XSEDE14 conference will be in Atlanta, Ga., on July 13-18, and XSEDE has issued a Call for Participation, including papers in several tracks and a poster session. The first dates to keep in mind are March 15, when tutorial proposals and paper submissions are due, and April 15, when poster, BoF, and Visualization Showcase submissions are due, as well as student travel grant requests. For more details, please see the CFP.

Blue Waters Graduate Fellowships

Doctoral students who need access to one of the most powerful supercomputers in the world to help complete their academic research might have that opportunity through a new graduate fellowship program managed by the Ohio Supercomputer Center through NCSA at the University of Illinois. Application deadline: Feb. 3, 2014. For more information, visit: https://bluewaters.ncsa.illinois.edu/fellowships

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