RICOPILI
Rapid Imputation and COmputational PIpeLIne for Genome-Wide Association Studies
RICOPILI stands for Rapid Imputation and COmputational PIpeLIne for GWAS - It is developed and maintained by Stephan Ripke at the Broad Institute and MGH.
The software consists of four independent modules: Pre-imputation (QC), PCA, Imputation, and Meta-Analysis. These modules are not meant to be used linearly. For example, it may be necessary to repeat QC after discovering your data contains multiple populations from PCA.
HowTo Pages
FAQ - Frequently Asked Questions
GitHub
You can find the Ricopili GitHub repository here.
Almost all scripts are written in Perl, with some scripts written in R.
Citation
The Ricopili manuscript is published: https://www.ncbi.nlm.nih.gov/pubmed/31393554.
Contributors and Experienced users
Stephan Ripke
sripke (at) broadinstitute.org
Raymod Walters
rwalters (at) broadinstitute.org
Max Lam
mlam (at) broadinstitute.org
Robert Karlsson
robert.karlsson (at) ki.se
Georgia Panagiotaropoulou
gpanagio (at) broadinstitute.org
Swapnil Awasthi
sawasthi (at) broadinstitute.org
Vassily Trubetskoy
vassily (at) broadinstitute.org
Hunna Watson
hunna_watson (at) med.unc.edu
Nina Roth Mota
ninarothmota@gmail.com
RICOPILI: Rapid Imputation and COmputational PIpeLIne for Genome-Wide Association Studies by Stephan Ripke is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. Based on a work at https://sites.google.com/a/broadinstitute.org/ricopili/download.