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Ergude Bao
 (Please call me 'Bao')

Contact

1207 G Genomics Building
University of California
Riverside, CA 92521
Email: baoe AT cs DOT ucr DOT edu
Phone: 951-756-6962

Status

Graduate student in PhD program of Department of Computer Science & Engineering, UC Riverside.
I am co-advised with Prof. Tao Jiang and Prof. Thomas Girke.

Education

PhD, Department of Computer Science and Engineering, University of California, Riverside, 2009-2014 (GPA: 3.95/4.00; expected)
ME, School of Software Engineering, Beijing Jiaotong University, China, 2006-2009 (Rank: 2/96)
BE, School of Computer and Information Technology, Beijing Jiaotong University, China, 2002-2006
Visiting Student, Group of Advanced Microsystems, Institute of Computing Technology, Chinese Academy of Sciences, 2007-2009

Algorithm Courses Taken

CS 238: Algorithmic Techniques in Computational Biology: Dr. Tao Jiang    A+
CS 234: Computational Methods for Biomolecular Data: Dr. Stefano Lonardi    A+
CS 218: Design and Analysis of Algorithms: Dr. Neal Young    A
CS 215: Theory of Computation: Dr. Marek Chrobak    A

Research Interests

I am interested in algorithm design for biological data. I also have a little research experience in algorithm design on parallel computer system architectures.

Projects

SEED: Clustering Next Generation Sequences
AlignGraph: Algorithm for Secondary de novo Genome Assembly Guided by Closely Related References

Publications

[1] Ergude Bao, Tao Jiang, and Thomas Girke. AlignGraph: Algorithm for Secondary de novo Genome Assembly Guided by Closely Related References. Proceedings of 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB'14). 2014. (Acceptance Ratio: 40/204 = 19.6%); Also Appears in Bioinformatics. 2014 (To Appear)

[2] Ergude Bao, Tao Jiang, and Thomas Girke. BRANCH: Boosting RNA-Seq Assemblies with Partial or Related Genome Sequences. Bioinformatics. 2013

[3] Ergude Bao, Tao Jiang, and Thomas Girke. SEED: Clustering Next Generation Sequences. Bioinformatics. 2011

[4] Ergude Bao, Weisheng Li, Dongrui Fan, Yang Yang, and Xiaoyu Ma. An Optimization of Broadcast on Godson-T Many-Core System Architecture. Journal of Computer Research and Development (CRAD). 2009

[5] Ergude Bao, Yang Yang, Hui Chen, Yuanyuan Lu, Xiao Liu, and Weisheng Li. A Study and Implementation of Self-Adaptive Allocation Algorithm for Parallel Program. Proceedings of the 5th International Conference on Soft Computing as Transdisciplinary Science and Technology (ICSTST’08). 2008

[6] Ergude Bao and Weisheng Li. A Study and Implementation of the Huffman Algorithm Based on Condensed Huffman Table. Journal of Microelectronics & Computer. 2007

[7] Hagop S. Atamian, Ritu Chaudhary, Valeriano Dal Cin, Ergude Bao, Thomas Girke, and Isgouhi Kaloshian. In Planta Expression or Delivery of Potato Aphid Macrosiphum euphorbiae EffectorsMe10 and Me23 Enhances Aphid Fecundity. Molecular Plant-Microbe Interactions. 2012

Teaching

CS08: Introduction to Computing. Fall 2012, Winter 2013, Spring 2013.

"Bao is such an amazing TA. He was very helpful, understanding, and also very respectful. There isn't enough words to describe how helpful Bao was. Definitely an amazing instructor." --- selected student comment.

About me
I am from Hohhot, the capital of Inner Mongolia, China. I am Mongolian minority, so my name is a little different from normal Chinese names. It is more convenient for me to call me "Bao" rather than "Ergude". I like jogging, basketball, movies and beers (this is the same with my advisor Thomas Girke :-)). I also wrote a novel in Chinese but just published it in Internet.