CUDA-MEME is a motif discovery software based on MEME version 3.5.4, pragrammed using the CUDA programming model.
At present, CUDA-MEME only supports the OOPS and ZOOPS models. I has been tested on a GeForce GTX 280 graphics card.
For the parallel alignment, as an optional part, the single-precision floating point is used instead of double-precision floating point, which at times
results in slightly different starting points due to the loss of precision of the P-values. However, the print-out scores are the same, so
it does not matter.
When modifying, copying or distributing CUDA-MEME, please read carefully about the copyright in the file tarball.
If having any qeustions or improvement about this software, please contact Liu Yongchao without hesitation (liuy0039@ntu.edu.sg or nkcslyc@hotmail.com). Thank you! |