Recent papers


05-28-2010: Volkan Cakir
Robinson und Oshlack. A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol (2010) vol. 11 (3) pp. R25 (download)
05-21-2010: David Langenberger
Chiang et al. Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes Dev (2010) pp. (download)
04-16-2010: Alexander Ullrich
MacLean et al. Finding sRNA generative locales from high-throughput sequencing data with NiBLS. BMC Bioinformatics (2010) vol. 11 pp. 93 (download)
04-09-2010: Christian Otto
Sasidharan et al. An approach to comparing tiling array and high throughput sequencing technologies for genomic transcript mapping. BMC Res Notes (2009) vol. 2 pp. 150 (download)
03-26-2010: Jörg Lehmann
Farlow et al. Nonsense-mediated decay enables intron gain in Drosophila. PLoS Genet (2010) vol. 6 (1) pp. e1000819 (download)
03-19-2010: Alexander Donath
Jung et al. Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data. BMC Genomics (2010) vol. 11 (1) pp. 77 (download)
03-12-2010: Dominic Rose
Wang et al. Alternative isoform regulation in human tissue transcriptomes. Nature (2008) vol. 456 (7221) pp. 470-6 (download)
03-05-2010: Mario Fasold
Bullard et al. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC bioinformatics (2010) vol. 11 (1) pp. 94 (download)
02-26-2010: Ishaan Gupta
Jacquier. The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs. Nat Rev Genet (2009) vol. 10 (12) pp. 833-44 (download)
02-19-2010: no journal club
25th TBI Winterseminar in Bled
02-12-2010: Clara Bermudez Santana
Lee et al. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev (2009) vol. 23 (22) pp. 2639-49. (download)
02-05-2010: Ishaan Gupta
Licatalosi and Darnell. RNA processing and its regulation: global  insights into biological networks. Nat Rev Genet (2010) vol. 11 (1)  pp. 75-87 (download)
01-29-2010: Sven Findeiß
Albrecht et al. Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome. Nucleic Acids Res (2009) pp. (download)
01-22-2010: David Langenberger
Huang J, Hao P, Chen H, Hu W, Yan Q, et al. 2009 Genome-Wide Identification of Schistosoma japonicum MicroRNAs Using a Deep-Sequencing Approach. PLoS ONE 4(12): e8206. doi:10.1371/journal.pone.0008206 (download)