Chip-seq:
Fundamentals/Reviews:
Kharchenko et al. Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nat Biotechnol (2008) vol. 26 (12) pp. 1351-9
publisher's page
Park. ChIP-seq: advantages and challenges of a maturing technology. Nat Rev Genet (2009) vol. 10 (10) pp. 669-80
publisher's page
Analysis tools:Zhang et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol (2008) vol. 9 (9) pp. R137
publisher's page
Machanick und Bailey. MEME-ChIP: motif analysis of large DNA datasets. Bioinformatics (2011) vol. 27 (12) pp. 1696-7
publisher's page
Epigenetics:
Cain et al. Gene expression differences among primates are associated with changes in a histone epigenetic modification. Genetics (2011) vol. 187 (4) pp. 1225-34
publisher's page
Ernst et al. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature (2011) vol. 473 (7345) pp. 43-9
publisher's page
Chu et al. Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions. Molecular cell (2011) pp.
publisher's page
Tsai et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science (2010) vol. 329 (5992) pp. 689-93 publisher's page
Transcription factors:
MacQuarrie et al. Genome-wide transcription factor binding: beyond direct target regulation. Trends Genet (2011) vol. 27 (4) pp. 141-8
publisher's page
Schmidt et al. Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science (2010) vol. 328 (5981) pp. 1036-40
publisher's page
Dowell. Transcription factor binding variation in the evolution of gene regulation. Trends Genet (2010) vol. 26 (11) pp. 468-75
publisher's page
O'Geen et al. Using ChIP-seq technology to identify targets of zinc finger transcription factors. Methods Mol Biol (2010) vol. 649 pp. 437-55
publisher's page
Others:
Guttman et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature (2011) vol. 477 (7364) pp. 295-300
publisher's page
|
|
