Shameer Khadar

 

Dr. R. Sowdhamini's Lab, #25, The Computational Biology group, NCBS - TIFR, Bangalore - India

Education :

 

Pre-Degree Physics, Chemistry & Biology (Calicut University)

Honours Diploma in Internet Technology  (SSi Technologies)

BSc Physics with Chemistry & Mathematics (Calicut University, Kerala)

MSc Bioinformatics (Gold Medal - Mahatma Gandhi University, Kerala)

Advanced Course on Genetics & Genomics (NCBS-TIFR, Bangalore) 

Foundations of Clinical Research, GCP & Data Management (ACE-BCP, Mumbai)

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Careergraph :  ( Including Research & Accademic Experience )

 

MSc Thesis: Whole Genome Expression Data Analysis from cDNA Microarray Technology at                                                                  Centre for Cellular and Molecular Biology, Hyderabad

Principal Investigator:  Dr. Jyotsna Dhawan

Duration: September 2004 – December 2004

http://www.ccmb.res.in

 

Lecturer in Bioinformatics and Research Assistant at Department of Bioinformatics

Mar Athanasios College for Advanced Studies (MACFAST), Tiruvalla

Affiliated to Mahatma Gandhi University, Kottayam 

Principal Investigator:  Prof. Ignatius Kunjumon

Duration: January 2005 – June 2005

http://www.macfast.org

 

Lecturer in Bioinformatics & Research Assistant at Institute of Bioinformatics & Biotechnology                                                               Dr. D.Y. Patil Vidyapeeth – Deemed University

Navi Mumbai – Maharshtra

Principal Investigator – Dr. D.A. Bhiwgade

Duration: July 2005 – September 2005

http://www.dypatil.edu

 

Current Position : 

 

Junior Research Fellow at

The Computational Biology Lab, National Centre for Biological Sciences,                                                                                               Tata Institute of Fundamental Research, Bangalore - India

Principal Investigator:  Dr. R. Sowdhamini

September – 2005 – till date

Supported by : Wellcome Trust, UK

http://www.ncbs.res.in | http://caps.ncbs.res.in

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Publications : List of Publications (June 2004-September 2006):

 

Full – papers:

 

1. HARMONY: a server for the assessment of protein structures. G. Pugalenthi., K Shameer., N. Srinivasan., and R. Sowdhamini. (2006) Nucleic Acids Research 34: 143-146 ABSTRACT
   

 

2. Hypothetical Protein-Protein Interaction Pathway of FANC core complex based on motif Analysis Shameer K et. al ;( 2005) Bioinformatics Trends, Vol-3, Issue – 4. P 112-119 ABSTRACT
   

 

3. Gene^Scape – Web based Multiple gene-mapping tool for Mus Musculus. Shameer K et. al; (2005) Bioinformatics Trends, Vol – 3, Issue – 4 P 140-142. ABSTRACT
   

 

4. Protein * Quest – A web based cross-reference protein information resource.  Shameer K et. al; (2004) Bioinformatics Trends, Vol-2 Issue-3 P 47 - 52.  ABSTRACT  

More to come very soon ...

General Review

 

1. Bioinformatics – A gentle Insight, Shameer K, Zarina M, (2004) SAJOSPS, 5^th Annual Issue pg.105-112. (General Review)

 

 

International level Conference / Poster Abstracts: (Partial List )

 

1. HARMONY – Web Server for Protein Structure Assessment                                                                                                                Presented at Indo-French Bioinformatics Meeting (IFBM), held at National Centre for Biological Sciences (TIFR) -  Bangalore – India. June – 2006

 

2. FANC Core complex formation pathway based on motif analysis                                                                                                   Presented at 4^th symposium on Computation of Biochemical Pathways and Genetic Networks, held at EML Research, Heidelberg – Germany . September – 2005 *

 

3. Function Annotation of oGPCR (Orphan GPCRs) using multiple strategies                                                                             Presented at 9^th ADNAT Meeting (RNAi-2006), held at Centre for Cellular and Molecular Biology(CCMB), Hyderabad – India. February - 2006

 

4. DDTdb – The Disease, Drugs &  Target Database                                                                                                                     Presented at 30^th meeting of Indian Society of Human Genetics, held at Centre for Cellular and Molecular Biology(CCMB), Hyderabad – India. February - 2005

 

5. Protein*Quest – Web-based Protein Cross Reference Information Resource                                                                                 Presented at 30^th meeting of Indian Society of Human Genetics held at Centre for Cellular and Molecular Biology(CCMB), Hyderabad – India. February - 2005  

 

6. Gene^Scape – Multiple Gene Mapping Software                                                                                                                                  Presented at 9^th ADNAT Meeting, held at  Centre for Cellular and Molecular Biology(CCMB), Hyderabad – India. February - 2005  

 

7.  MBDI – Biological Database Index                                                                                                                                                     Presented at 7^th Symposium on Proteomics at Centre for Cellular and Molecular Biology (CCMB), Hyderabad – India.    February – 2004

 

* Oral Presentation