Software

CellNetOptimizera MATLAB toolbox for creating logic-based models of signal transduction networks, and training them agains high-throughput biochemical data

DataRail - is an open source MATLAB toolbox for managing, transforming, visualizing, and modeling data, in particular the high-throughput data encountered in Systems Biology

Q2LM - Querying Quantitative Logic Models for simulating, exploring, and querying constrained fuzzy logic models.