Q9H8Q0-1
Homosapiens Y Chromosome Protein
Protein Sequence
>Q9H8Q0-1|CXY02_HUMAN Isoform 1 of Q9H8Q0 - Homo sapiens (Human)
MASHGGNTLEIVQKMGRCRLECGEGLRPCLVDGTVTAAVCLLGGASPPAAGRPLRETAES
WSPGQPGGDPSAGHRGHSRQQELRTLSATLLSNLWTLSSGQSCRIRHRTYSSALGRGSLK
KSPGLKTKRDTSVRDRRGDRHRGEGHVETEAETGVMRPQAQGRLEPPGAGRGGKDPPLEP
LRKNQTQLQWVGW
Primary Structure
Compute pI
Theoretical pI 10.21
Molecular weight 20726.34 (Daltons)
Protparam
Formula C876H1437N295O273S8
Sequence Length 193
Total Atoms 2889
Secondary Structure
GOR, HNN & SOPMA
|
GOR |
HNN |
SOPMA |
|||||||
|
Alpha Helix |
Extended Strand |
Random Coil |
Alpha Helix |
Extended Strand |
Random Coil |
Alpha Helix |
Extended Strand |
Beta Turn |
Random Coil |
| 16.06 |
19.69 |
64.25 |
13.99 |
10.88 |
17.13 |
24.87 |
10.88 |
9.33 |
54.92 |
Tertiary Structure Prediction
I-TASSER
3-D Structure predicted By I-tasser server(Ab initio method) = Q9H8Q0-1
#model : C-score TM-score RMSD (in Angstroms)Q9H8Q0-1 : -4.14 0.40 +- 0.14 11.3 +- 4.5
C-score is a confidence score of the I-TASSER predictions which is
typically in [-5,2]. TM-score and RMSD measure how close the model is
to the native structure and both are estimated based on the C-score.
TM-score is in [0,1] with a value >0.5 implying the model of correct
topology. The TM-score and RMSD estimations are made only for the first
model because absolute values of TM-score and RMSD for the lower-rank
models do not strongly correlate with the C-score. The models are
ranked based on the structure density of I-TASSER simulations. Please
cite following articles when you use the I-TASSER server:
1) Yang Zhang. I-TASSER server for protein 3D structure prediction.
BMC Bioinformatics, 9:40 (2008).
2) Yang Zhang. Template-based modeling and free modeling by
I-TASSER in CASP7. Proteins, 8: 108-117 (2007).
3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of
small proteins by iterative TASSER simulations. BMC Biology,
5:17 (2007).
Structure Validation
PROCHECK
Saves Result : Procheck Summary Ramachandran Plot: Plot Statistics
Function Prediction
|
Interproscan |
GOG |
Pfam |
Blast |
| No Hits reported |
No relative Cogs |
No hits |
No putative conserved domains have been detected |
