Q9BXH5-1
Homosapiens Y Chromosome Protein
Protein Sequence
>Q9BXH5-1|TTY6_HUMAN Isoform 1 of Q9BXH5 - Homo sapiens (Human)
MHLHRGLLLSQASGNCGIHAVPVICSHWRRRCLDCDGVSENCSSDFIPERGCVQELSPRG
TGMLSGECVGPHPPLTSLYPHLYLMLWLLKVSVPK
Primary Structure
Compute pI
Theoretical pI 7.65
Molecular weight 10465.22 (Daltons)
Protparam
Formula C458H727N133O128S10
Sequence Length 95
Total Atoms 1456
Secondary Structure
GOR, HNN & SOPMA
|
GOR |
HNN |
SOPMA |
|||||||
|
Alpha Helix |
Extended Strand |
Random Coil |
Alpha Helix |
Extended Strand |
Random Coil |
Alpha Helix |
Extended Strand |
Beta Turn |
Random Coil |
| 6.32 |
25.26 |
68.42 |
16.84 |
14.74 |
68.42 |
16.84 |
20.00 |
15.79 |
47.37 |
Tertiary Structure Prediction
I-TASSER
3-D Structure predicted By I-tasser server(Ab initio method) = Q9BXH5-1
#model : C-score TM-score RMSD (in Angstroms)Q9BXH5-1 : -4.10 0.28 +- 0.09 13.3 +- 4.1
C-score is a confidence score of the I-TASSER predictions which is
typically in [-5,2]. TM-score and RMSD measure how close the model is
to the native structure and both are estimated based on the C-score.
TM-score is in [0,1] with a value >0.5 implying the model of correct
topology. The TM-score and RMSD estimations are made only for the first
model because absolute values of TM-score and RMSD for the lower-rank
models do not strongly correlate with the C-score. The models are
ranked based on the structure density of I-TASSER simulations. Please
cite following articles when you use the I-TASSER server:
1) Yang Zhang. I-TASSER server for protein 3D structure prediction.
BMC Bioinformatics, 9:40 (2008).
2) Yang Zhang. Template-based modeling and free modeling by
I-TASSER in CASP7. Proteins, 8: 108-117 (2007).
3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of
small proteins by iterative TASSER simulations. BMC Biology,
5:17 (2007).
Structure Validation
PROCHECK
Saves Result : Procheck Summary Ramachandran Plot: Plot Statistics
Function Prediction
|
Interproscan |
GOG |
Pfam |
Blast |
| No Hits reported |
No relative Cog |
No related hits |
No putative conserved domains have been identified |
