Primary Structure

Compute pI

             Theoretical pI   5.21

             Molecular weight    33884.16 (Daltons)

Protparam 

            Formula                 C₁₄₈₁H₂₃₂₂N₄₂₈O₄₅₇S₁₄

            Sequence Length    142

            Total Atoms           2339

_{Secondary Structure}

 _{GOR, HNN & SOPMA}

_{Tertiary Structure Prediction}

3-D Structure predicted By I-tasser server(Ab initio method) = A6NEC3

-----The estimate of A6NEC3-----------

 #model    : C-score   TM-score          RMSD (in Angstroms)
A6NEC3 : -2.87  0.39+-0.13  13.1+-4.2

      C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations.Please cite following articles when you use the I-TASSER server:

  1) Yang Zhang. I-TASSER server for protein 3D structure prediction.
   BMC Bioinformatics, 9:40 (2008).
  2) Yang Zhang. Template-based modeling and free modeling by
   I-TASSER in CASP7. Proteins, 8: 108-117 (2007).
  3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of
   small proteins by iterative TASSER simulations. BMC Biology,
   5:17 (2007).

Structure Validation

PROCHECK

           Saves Result : Procheck Summary                                     Ramachandran Plot: Plot Statistics

 Predicted Function