Formula                 C₁₅₄₈H₂₄₁₃N₄₃₇O₄₇₂S₁₄

            Sequence Length    308

            Total Atoms           4884

_{Secondary Structure}

 _{GOR, HNN & SOPMA}

_{Tertiary Structure Prediction}

I-TASSER 

3-D Structure predicted By I-tasser server(Ab initio method) = A6NDJ3

-----The estimate of A6NDJ3 -----------

 #model : C-score TM-score RMSD (in Angstroms)

A6NDJ3 : -2.75 0.40+-0.13 12.8+-4.2

      C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER server:

  1) Yang Zhang. I-TASSER server for protein 3D structure prediction.
   BMC Bioinformatics, 9:40 (2008).
  2) Yang Zhang. Template-based modeling and free modeling by
   I-TASSER in CASP7. Proteins, 8: 108-117 (2007).
  3) Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of
   small proteins by iterative TASSER simulations. BMC Biology,
   5:17 (2007).

Structure Validation

PROCHECK

           Saves Result : Procheck summary                                           Ramachandran Plot: Plot Statistics

Function Prediction

                     Home