Bob wiki (internal) http://bob:8099/wiki/doku.php
CSSB (Czech Society for Structural Biology) http://www.structbio.eu/
BIOCEV http://www.biocev.eu/
List of crystallographers http://www.weizmann.ac.il/esf_xtal/czech.htmlmap of Krc: http://www.biomed.cas.cz/areal_en.gif
search in ASEP www.it.cas.cz/cs/lib/asep

Technical support:
copy center Dejvice       www.mpcopier.cz
colour labels for gases http://www.catp.cz/lahve.php
pravopisna prirucka http://prirucka.ujc.cas.cz
h-index (Hirschuv index): http://www.scopus.com/home.url

Books and journals:
survey of journals available from IMC  http://rzblx1.uni-regensburg.de/ezeit/index.phtml?bibid=IMC&colors=7&lang=en
Biomolecular Crystallography book (Bernhard Rupp) http://www.ruppweb.org/garland/default.htm
English explanatory dictionary: http://www.thefreedictionary.com/

Travelling:
travel connections in the world  http://www.seat61.com/Linkspage.htm
plan travel by car: http://www.viamichelin.co.uk
maps of cities: http://mappery.com/

Unix:
cat and grep: http://www.robelle.com/smugbook/regexpr.html

Lab:
protein molar weight calculator  http://www.sciencegateway.org/tools/proteinmw.htm
on-line calculator of molecular weights http://www.labo.cz/mft/mol_vahy.htm
buffer calculator http://www.liv.ac.uk/buffers/buffercalc.html
periodic table http://www.webqc.org/periodictable-Calcium-Ca.html
how to determine protein concentration http://www-class.unl.edu/biochem/protein_assay/

Proteins:
Brenda-enzyme classification   http://www.brenda-enzymes.org/
About proteins and their structures: www.proteopedia.org

Protein crystallography:

Summary:  http://proteincrystallography.org/
A lot of software: http://en.bio-soft.net/

        1) sequence analysis
protein calculator http://expasy.org/cgi-bin/protparam
protein calculator (Mw, pI, absorbance) http://www.scripps.edu/~cdputnam/protcalc.html
protein calculator (protein weight and molarity) http://molbiol.edu.ru/eng/scripts/h01_04.html
CLUSTALW: sequence alignment http://www.ebi.ac.uk/Tools/msa/clustalw2/
BLAST: find conserved domains in your sequence http://blast.ncbi.nlm.nih.gov/Blast.cgi
estimation of protein diameter: http://www.calctool.org/CALC/prof/bio/protein_size
image of sequence with secondary structure: http://polyview.cchmc.org

        2) data processing and phasing
periodic table with X-ray properties  http://www.csrri.iit.edu/periodic-table.html
plot f',f''  http://skuld.bmsc.washington.edu/scatter/AS_form.html
adxv: software to display X-ray diffraction images http://www.scripps.edu/~arvai/adxv.html
Manfred Weiss: Rmerge, Rrim and Rpim: http://www.embl-hamburg.de/~msweiss/projects/msw_qual.html
YSBL software (space groups,  Balbes-mol. replacement) http://www.ysbl.york.ac.uk/YSBLPrograms/index.jsp
Momo - to create animated diffraction image http://www.bioxray.au.dk/~bjopp/momo
Anisotropic server http://services.mbi.ucla.edu/anisoscale/

        3) structure analysis
EBI-SSM: secondary structure matching http://www.ebi.ac.uk/msd-srv/ssm/
SSM using Dali server: http://ekhidna.biocenter.helsinki.fi/dali_server/
Polyview-3D: make movie (figure) easily  http://polyview.cchmc.org/polyview3d.html
electrostatic potential on surface - make figure http://bioserv.rpbs.univ-paris-diderot.fr/cgi-bin/PCE-Pot
electrostatics more rigorously: PDB2PQR online   http://kryptonite.nbcr.net/pdb2pqr/   and APBS http://www.poissonboltzmann.org/
Raster3D (open by command render (in shell); graphical output from Coot) http://skuld.bmsc.washington.edu/raster3d/
Coot manual http://www.biop.ox.ac.uk/coot/doc/coot.html#Top
SMILES (possible import of ligand to Coot): http://www.molinspiration.com/cgi-bin/properties
PROTORP (protein interface) http://www.bioinformatics.sussex.ac.uk/protorp   http://www.bioinformatics.sussex.ac.uk/protorp/cgi-bin/PPanalyse.pl
Visualisation of molecules: http://personal.cscs.ch/~mvalle/ChemViz/tools.html

MolProbity http://molprobity.biochem.duke.edu/

         4) modelling tools
Swis-model  (homology modelling server) http://swissmodel.expasy.org/
AutoDock Vina (we have installed)
protein-protein docking: http://www.nmr.chem.uu.nl/haddock/  (necessary to install),
Rosetta protein-protein docking: http://rosettadock.graylab.jhu.edu/ (server)
homology modelling program for download (paid) http://www.yasara.org

Other pages with X-ray links:
Petr Kolenko  http://sites.google.com/site/petrkolenko/c
Pawel Grochulski http://homepage.usask.ca/~pag266/Xray-soft.html