A java applet is used to display the comparison between all the methods, and the comparison between CATH,SCOP and the consensus assignments that are generated.  This is a stacked bar chart, created using the JFreeChart library.

The same applet is used in all cases, which creates a graph base.  The information to create the bars is calculated by the PHP pages and sent into the applet as parameters.

The java file is MethodGraph2.java.

On the page, this is accessed using the jar file Graph2.jar.  This jar file is produced by the jardesc file ComparisonGraph.jardesc, using the manifest file GraphManifest2

To work correctly, this also relies on two other JAR files, which must be in the same directory:

• jcommon-1.0.15.jar

• jfreechart-1.0.12.jar