Statistics by method:
The following stats are gathered for each method:

• Total Cuts Made by Method
• Average Cuts Per Chain
• Chains containing boundary cutting helix
• Chains containing boundary cutting sheet
• Chains where number of domains agrees with CATH
• Chains where number of domains is higher than CATH (Overcuts)
• Chains where number of domains is lower than CATH (Undercuts)
• Average number of domains per chain
• Average number of fragments per domain
• The number of domains with i number of fragments (where i is an increasing integer)

For the methods, these are calculated by the file MethodStats.java

This uses a further class, CompareCutStats.java, which determines if a helix or beta sheet is cut by any of the boundaries that have been set on the chain

Statistics for Generated Consensus:
The following stats are gathered for the consensus:

• Chains where methods produce a single option, strong consensus
• Chains where methods producing a multiple option consensus
• Chains where methods produce no consensus
• Chains where the generated consensus agrees with CATH
• Chains where generated consensus contains more domains than CATH (Overcut)
• Chains where generated consensus contains less domains than CATH (Undercut)

These statistics are calculated in the java program Consensus2Stats.java