This guide details the recent project completed at UCSD to create a tool (dConsensus) which compares domain assignment algorithms, and attempts to produce a consensus domain assignment from these results.  This has added functionality to the pDomains website (pdomains.sdsc.edu/dConsensus).  Statistics on a range of domain assignment algorithms have also been produced.  In an attempt to make this project open and easy to assess, all the code that has been used, and all the algorithms, have been included.

In all, this guide includes:

• How the database is set up to hold the domain assignments for each algorithm
• How the results of each algorithm have been loaded into the database, and contains the java loader which has done this
• How a consensus between the automatic methods has been generated
• How the web front end works, and contains the files which makes this work
• How the statistics have been generated, and the java program used to generate these statistics.
  
• Any known issues