Nigel H. Collier

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Publications

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Book Chapters (4)
  1. Collier, N., Doan, S., Matsuda Goodwin, R., McCray, J., Conway, J., Shigematsu, M. and Kawazoe, A. (2010), “Navigating the Information Storm: Web-based Global Health Surveillance in BioCaster”, in BioSurveillance: A Health Protection Priority, Kass-Hout, T. and Zhang, X. (eds), Chapman and Hall, ISBN 978-1439800461. [Amazon]
  2. Doan, S., Conway, M. and Collier, N. "An Empirical Study of Sections in Classifying Disease Outbreak Reports", invited chapter in Annals of Information Systems, Special Issue "Web-based Applications in Health Care & Biomedicine", Springer, 2010 (in press).
  3. Wattarujeekrit, T. and Collier, N. (2005), “Exploring Predicate-Argument Relations for Named Entity Recognition in the Molecular Biology Domain”, Springer-Verlag Lecture Notes in Computer Science, vol. 3735, ISBN 3-540-29230-6, pp. 267-280. [html][PASBio data]
  4. Collier, N., Takeuchi, K., Kawazoe, A., Mullen, A. and Wattarujeekrit, T. (2003), “A framework for integrating deep and shallow semantic structures in text mining”, Springer-Verlag Lecture Notes in Computer Science, vol. 2773. ISBN 3-540-40803-7, pp. 824-834. [html]

Journal Articles (31)
  1. Collier, N. (2010), "Towards cross-lingual alerting for bursty epidemic events", Journal of Biomedical Semantics, 2 (Suppl 5):S10. [html][pdf][pubmed]
  2. Collier, N. (2010), Nguyen, S. T.and Nguyen, M. T. N.,"OMG U got flu? Analysis of shared health messages for bio-surveillance", Journal of Biomedical Semantics, 2 (Suppl 5):S9. [html][pdf][pubmed]
  3. Wei, Q. and Collier, N. (2011), "Towards classifying species is systems biology papers using text mining", BMC Research Notes, 4:32.[html][pdf][pubmed]
  4. Chanlekha, H. and Collier, N. (2010), "Analysis of syntactic and semantic features for fine-grained event-spatial understanding in outbreak news reports", Journal of Biomedical Semantics, 1:3, DOI: 10.1186/2041-1480-1-3. [html][pdf][pubmed] 
  5. Rebholz-Schuhmann, D, Collier, N., Park JC., Wong, L. (2010), "Wrestling with biomedical research results: Language resources and literature analysis", Journal of Bioinformatics and Computational Biology, 8(1): 129-130. [pdf][pubmed]
  6. Chanlekha, H. and Collier, N. (2010), "A methodology to enhance spatial understanding of disease outbreak events reported in news articles", International Journal of Medical Informatics, 79(4): 284-296. [html][pubmed]
  7. Conway, M., Kawazoe, A., Chanlekha, H. and Collier, N. (2010), “Developing a disease outbreak corpus”, Journal of Medical Internet Research, 12(3): e43. [html][pubmed]
  8. Chanlekha, H. and Collier, N. (2010), “A framework for enhanced spatial and temporal granularity in report-based health surveillance systems”, Journal of Medical Informatics and Decision Making, 10(1). [provisional pdf][pubmed]
  9. Collier, N. (2010), “What’s unusual in online disease outbreak news?”, Journal of Biomedical Semantics 1:2, DOI:10.1186/2041-1480-1-2. [html][pdf][pubmed]
  10. Hartley, D., Nelson N., Walters R., Arthur R., Yangarber R., Madoff L., Linge J., Mawudeku A., Collier N., Brownstein J., Thinus, G. and Lightfoot N. (2010), “The landscape of international event-based biosurveillance”, Emerging Health Threats Journal, 3:e3.[html]
  11. Conway, M., Doan, S., Kawazoe, A. and Collier, N. (2009), “Classifying disease outbreak reports using n-grams and semantic features”, International Journal of Medical Informatics, 78(12): e47-e58, DOI 10.1016/j.ijmedinfo.2009.03.0101. [html][pubmed]
  12. Doan, S., Kawazoe, A., Conway, M. and Collier, N. (2009), “Towards role-based filtering of disease outbreak reports”, Journal of Biomedical Informatics, Elsevier, DOI: 10.1016/j.jbi.2008.12.009). [html][pubmed]
  13. Collier, N. Doan, S., Kawazoe, A., Matsuda Goodwin, R., Conway, M., Tateno, Y., Ngo, Q., Dien, D., Kawtrakul, A., Takeuchi, K., Shigematsu, M. and Taniguchi, K. (2008), “BioCaster: detecting public health rumors with a Web-based text mining system”, Bioinformatics, 24(24):2940-2941, Oxford University Press, DOI: 10.1093/bioinformatics/btn534. [html] [pubmed]
  14. Kawazoe, A., Jin, L., Shigematsu, M., Bekki, D., Barrero, R., Taniguchi, K. and Collier, N. (2008), “The development of a schema for the annotation of terms in the BioCaster disease detection/tracking system”, Journal of Applied Ontology, IOS Press. [html]
  15. Kawazoe, A., Chanlekha, H., Shigematsu, M. and Collier, N. (2008), “Structuring an event ontology for disease outbreak detection”, BMC Bioinformatics, 9 (Suppl 3): S8, DOI: 10.1186/1471-2105-9-S3-S8. [pdf][html][pubmed]
  16. McCrae, J. and Collier, N. (2008), “Synonym set extraction from the biomedical literature by lexical discovery”, in BMC Bioinformatics, 9:159, DOI: 10.1186/1471-2105-9-159. [pdf][html][pubmed]
  17. Thao, P.T.X., Tri, T.Q., Dien, D. and Collier, N. (2007), “Named entity recognition in Vietnamese using classifier voting”, Transactions of Asian Language Information Processing (TALIP), 6(4), ACM. [pdf]
  18. Collier, N., Kawazoe, A., Son, D., Shigematsu, M., Taniguchi, K., Jin, L., McCrae, J., Chanlekha, H., Dien, D., Hung, Q., Nam, V., Takeuchi, K. and Kawtrakul, A. (2007), “Detecting Web rumours with a multilingual ontology-supported text classification system”, Advances in Disease Surveillance, 4: 242, ISDS.
  19. Tri, T.Q., Thao P.T.X.., Hung N.Q., Dien, D. and Collier, N. (2007), "Named entity recognition in Vietnamese documents", Progress in Informatics, 4, NII, May. [pdf]
  20. Collier, N., Kawazoe, A., Jin, L., Shigematsu, M., Dien, D. Barrero, R., Takeuchi , K.and Kawtrakul, A. (2006), “A multilingual ontology for infectious disease surveillance: rationale, design and challenges”, Language Resources and Evaluation, 40(3-4): 405-413, Springer Netherlands, DOI: 10.1007/s10579-007-9019-7. [html]
  21. Collier, N., Nazarenko, A., Baud, R. and Ruch, P. (2006) “Recent advances in natural language processing for biomedical applications”, International Journal of Medical Informatics, Elsevier, 75(6): 413-417. [pubmed]
  22. Mizuta, Y., Korhonen, A., Mullen, T. and Collier, N. (2006), “Zone analysis in biology articles as a basis for information extraction”, International Journal of Medical Informatics, Elsevier, 75(6): 468-487. [pubmed]
  23. Takeuchi , K.and Collier, N. (2005), "Bio-medical entity extraction using support vector machines", Artificial Intelligence in Medicine, 33(2): 125-137, Elsevier, DOI: 10.1016/j.artmed.2004.07.019. [pubmed]
  24. Mullen, A., Mizuta, Y. and Collier, N. (2005), "A baseline feature set for learning rhetorical zones using full articles in the biomedical domain", SIGKDD Explorations, 7(1):52-58, ACM. [pdf]
  25. Wattarujeekrit, T., Shah, P. and Collier, N. (2004), “PASBio: predicate-argument structures for event extraction in molecular biology”, BMC Bioinformatics, 5:155, DOI: 10.1186/1471-2105-5-155. [pdf][pubmed][PASBio data]
  26. Collier, N. and Takeuchi, K. (2004), “Comparison of character-level and part of speech features for name recognition in bio-medical texts”, Journal of Biomedical Informatics, 37(6): 423-435, Elsevier. [pubmed][bio1 named entity data]
  27. Kitamoto, K., Yamamoto, T., Sato, S, Collier, N., Kawazoe, A., Ono, K. (2004), “Text readability and coreference annotation across heterogeneous media on the digital archive of rare books”, Transactions of the Institute of Image Electronics Engineers of Japan, (in Japanese)
  28. Collier, N., Nobata, C. and Tsujii, J. (2001), "Automatic acquisition and classification of molecular biology terminology using a tagged corpus", Terminology, 7(2): 239-258, John Benjamins.[html abstract]
  29. Jones, G., Collier, N., Sakai, T., Sumita, K. and Hirakawa, H. (2001) "A framework for cross-language information access: application to English and Japanese", Computers and the Humanities, 35: 371-388, Kluwer Academic Publishers, pp. 371-388.
  30. Sakai, T., Kajiura, M., Sumita, K., Jones, G. and Collier, N. (1999) "A study of English-Japanese/ Japanese-English cross language information retrieval using machine translation", Transactions of the Information Processing Society of Japan, 40(11): 4075-4086.
  31. Collier, N., Hirakawa, H. and Kumano, A., (1999) "Creating a noisy parallel corpus from newswire articles using multi-lingual information retrieval", Transactions of the Information Processing Society of Japan, 40(1): 351-361.

Conference/Workshop Papers (61)
  1. Doan, S., Vo, B. K. H. and Collier, N. (2011), "An analysis of Twitter messages in the 2011 Tohoku earthquake", Proc. eHealth 2011, Malaga, Spain, November 21-23. [arxiv][pdf] (in press).
  2. Collier, N. (2010), "Towards cross-lingual alerting for bursty epidemic events", Proc. 4th Symposium on Semantic Mining in BioMedicine (SMBM'10), Cambridge, UK, October 25-26 (also published in the Journal of Biomedical Semantics).
  3. Collier, N. (2010), Nguyen, S. T.and Nguyen, M. T. N.,"OMG U got flu? Analysis of shared health messages for bio-surveillance", Proc. 4th Symposium on Semantic Mining in BioMedicine (SMBM'10), Cambridge, UK, October 25-26 (also published in the Journal of Biomedical Semantics).
  4. Rebholz-Schuhmann, D., Jimeno, A., Li, C., Kafkas, S., Lewin,  I., van Mulligen, E., Kors, J., Kang, N., Buyko, E., Beisswanger, E., Hahn, U., Corbett, P., Milward, D., JO Baker, C., Rinaldi, F., Kouznetsov, A., Farkas, R., Móra, G., Hara, K., Furlong, L., Rautschka, M., Lara Neves, M., Mahbub Chowdhury, F., Lavelli, A., Wei, Q., Collier, N., Berlanga, R. and Morante, R. (2010), "Assessment of NER solutions against the first and second CALBC Silver Standard Corpus", Proc. 4th Symposium on Semantic Mining in BioMedicine (SMBM'10), Cambridge, UK, October 25-26 (also published in the Journal of Biomedical Semantics).
  5. Collier, N., Matsuda Goodwin, R., McCrae, J., Doan, S., Kawazoe, A., Conway, M., Kawtrakul, A., Takeuchi, K. and Dien, D. (2010), "An ontology-driven system for detecting global health events", Proc. 23rd International Conference on Computational Linguistics (COLING), Beijing, China, August 23-27, pp.215-222. [pdf]
  6. Chanlekha, H. and Collier, N. (2009), “Analysis of syntactic and semantic features for fine-grained event-spatial understanding in outbreak news reports”, Proc. 3rd International Symposium on Languages in Biology and Medicine, Jeju Island, Korea, November 8-10.
  7. Conway, M., Doan, S., Kawazoe, A. and Collier, N. (2008), "Classifying disease outbreak reports using n-grams and semantic features", Proc. 3rd International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland, September 2-3, pp. 29-36. [pdf]
  8. Conway, M., Doan, S., Kawazoe, A. and Collier, N. (2009), “Using hedges to enhance a disease outbreak report text mining system”, Proc. BioNLP 2009, pp. 142-143. [pdf]
  9. Korhonen, A., Krymolowski, Y. and Collier, N. (2008), "The choice of features for classification of verbs in biomedical texts", Proc. 22nd International Conference on Computational Linguistics (COLING 2008), Manchester, UK, August 18-22. [pdf]
  10. Doan, S., Hung-Ngo, Q., Kawazoe, A. and Collier, N. (2008), "Global Health Monitor - a Web-based system for detecting and mapping infectious diseases", Proc. International Joint Conference on Natural Language Processing (IJCNLP), Companion Volume, Hyderabad, India, January 7-12, pp. 951-956
  11. Doan, S., Kawazoe, A. and Collier, N. (2007), "The role of roles in classifying annotated biomedical texts", Proc. Workshop on Biomedical Natural Language Processing (BioNLP 2007), Prague, Czech Republic, June 29, pp. 17-24. [pdf]
  12. Collier, N., Kawazoe, A. Shigematsu, M., Taniguchi, K., Jin, L., McCrae, J., Dien, D., Hung, Q., Takeuchi, K., Kawtrakul, A. (2007), "Ontology-driven influenza surveillance from Web rumours", Proc. Options for the Control of Influenza VI (Options 2007), Toronto, Ontario, Canada, June 17-23.
  13. Thao, P.T.X., Kawazoe, A., Dien, D. and Collier, N. (2007), "Construction of a Vietnamese corpora for named entity recognition", Proc. Recherche d'Information Assistee par Ordinateur (RIAO 2007), Pittsburgh, PA, USA, May 30th – June 1st.
  14. Kawazoe, A., Jin, L., Shigematsu, M., Barerro, R., Taniguchi , K. and Collier, N. (2006), "The development of a schema for the annotation of terms in the BioCaster disease detection/tracking system", Olivier Bodenreider (ed)., Proc. International Workshop on Biomedical Ontology in Action (KR-MED 2006), Baltimore, Maryland, USA, November 8th, pp. 77-85. [pdf]
  15. Korhonen, A., Krymolowski, Y. and Collier, N. (2006), "Automatic classification of verbs in biomedical texts", Proc. 21st International Conference on Computational Linguistics and the 44th Annual Meeting of the Association for Computational Linguistics, Sydney, Australia, July 17-21, pp. 345-352. [pdf]
  16. Mizuta, Y., Kawamoto, S., Mullen, T., Kawazoe, A., and Collier, N. (2005), “Creation of a dataset for zone analysis in biomedical texts: the design process and preliminary investigations”, Proc. 1st International Symposium on Languages in Biology and Medicine, Daejeon, Korea, November 24-26.
  17. Kogan, Y., Collier, N., Pakhomov, S. and Krauthammer, M. (2005), "Towards semantic role labeling & IE in the medical literature", Proc. American Medical Informatics Association annual symposium, Washington DC, USA, October 22-26. [pubmed]
  18. Mullen, A. and Collier, N. (2004), "Sentiment analysis using support vector machines with diverse information sources", in Proc. Empirical Methods in Natural Language Processing (EMNLP’2004), Barcelona, Spain, July 25-26, pp. 412-418. [pdf]
  19. Mullen, A. and Collier, N. (2004), "Incorporating topic information into sentiment analysis models", Proc. 2004 Conference on Empirical Methods in Natural Language Processing (EMNLP 2004), Barcelona, Spain, July 25-26 .[pdf]
  20. Mizuta, Y. and Collier, N. (2004), "An annotation scheme for rhetorical analysis of biology articles", Proc. 4th International Conference on Language Resources and Evaluation (LREC'2004), Lisbon, Portugal, May 26-28. [pdf]
  21. Kawazoe, A., Kitamoto, A. and Collier, N. (2004), "Annotation of coreference relations among linguistic expressions and images in biomedical articles", Proc. 4th International Conference on Language Resources and Evaluation (LREC'2004), Lisbon, Portugal, May 26-28, pp. 529-532.
  22. Kawamoto, S., Araki, S., Itoh, T., Yoshinari, Y., Kobayashi, S., Mizuta, Y., Demiya, S., Muljadi, H., Suzuki, S., Kitamoto, A., Collier, N., Takeda, H., Fujiyama, A. (2004), "Creating the comprehensive online Japanese biology dictionary and basic ontology in Bio-portal project", Proc. 27th Annual Meeting of the Molecular Biology Society of Japan, Kobe, Japan, December, (in Japanese)
  23. Kawazoe, A., Kitamoto, A. and Collier, N. (2004), “Managing the semantics of coreference relations with Open Ontology Forge”, Proc. 4th Knowledge Markup and Semantic Annotation workshop held at the International Semantic Web Conference, Hiroshima, Japan, November 8th, pp.103-106.
  24. Wattarujeekrit, T. and Collier, N. (2004), “Integrating event frame annotation into the Open Ontology Forge annotation tool”, Proc. 4th Knowledge Markup and Semantic Annotation workshop held at the International Semantic Web Conference, Hiroshima, Japan, November 8th, pp. 119-124.
  25. Kim, J.D., Ohta, T., Tsuruoka, Y., Tateisi, Y. and Collier, N. (2004), "Introduction to the bio-entity recognition task at JNLPBA", Proc. Joint Workshop on Natural Language Processing in Biomedicine and its Applications, Geneva, Switzerland, August 28-29, pp. 70-75. [pdf]
  26. Mizuta, Y. and Collier, N. (2004), "Zone identification in biology articles as a basis for information extraction", Proc. Joint Workshop on Natural Language Processing in Biomedicine and its Applications held at COLING’2004, Geneva, Switzerland, August 28-29. pp. 29-35. [pdf]
  27. Ogata, N. and Collier, N. (2004), "Ontology Express: statistical and non-monotonic learning of domain ontologies from text", Proc. Workshop on Ontology Learning and Population held at the 16th European Conference on Artificial Intelligence (ECAI'2004), Valencia, Spain, August 22-24, pp. 43-48. [pdf]
  28. Kawazoe, A. and Collier, N. (2003), "Open Ontology Forge: a tool for ontology creation and text annotation in a biomedical domain", Proc. 14th Conference on Genome Informatics, Yokohama, Japan, December 14-17, pp. 677-678.
  29. Kawazoe, A. and Collier, N. (2003), "Open Ontology Forge: application of a tool for ontology creation and text annotation to cultural heritage information", Proc. Nara Symposium for Digital Silk Roads, Nara, Japan, December 10th, pp. 395-401.
  30. Takeuchi, K. and Collier, N. (2003), “Bio-medical entity extraction using a support vector machine”, in Proc. Workshop on Natural Language Processing in Biomedicine (BioNLP) at ACL’2003, Sapporo, Japan, July 11th, pp. 57-64.
  31. Collier, N. (2003), “Evaluation of an Open Mosix cluster for text mining”, Proc. 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2003), Tokyo, Japan, May 12th- 15th.
  32. Collier, N., Takeuchi, K. and Kawazoe, A. (2003), “Open Ontology Forge: an environment for text mining in a Semantic Web world”, Proc. International Workshop on Semantic Web Foundations and Application Technologies, Nara, Japan, March 11th, pp. 17-24.
  33. Kawazoe, A. and Collier, N. (2003), “An Ontologically-motivated annotation scheme for coreference”, Proc. International Workshop on Semantic Web Foundations and Application Technologies, Nara, Japan, March 11th, pp. 85-88.
  34. Takeuchi, K. and Collier, N. (2002), “Use of support vector machines in extended named entity recognition”, Proc. 6th Conference on Natural Language Learning (CoNLL-2002), Taipei, Taiwan, August 31st – September 1st, pp. 119-125.[pdf][bio1 named entity data]
  35. Collier, N., Takeuchi, K., Nobata, C., Fukumoto, J. and Ogata, N. (2002), “Progress on multi-lingual named entity annotation guidelines using RDF(S)", Proc. 3rd International Conference on Language Resources and Evaluation, Las Palmas, Spain, May 29th – 31st, pp. 2074-2081.
  36. Collier, N. and Takeuchi, K., (2002), “PIA-Core: Semantic annotation through example-based learning”, Proc. 3rd International Conference on Language Resources and Evaluation, Las Palmas, Spain, May 29th – 31st, pp. 1611-1614. [pdf]
  37. Collier, N., Takeuchi, K. and Tsuji, K. (2001), “The PIA Project: learning to semantically annotate texts from an ontology and XML-instance data”, in position paper proc. 1st Semantic Web Working Symposium (SWWS’2001), Stanford University, California, USA, July 30th – August 1st, pp.8-9.
  38. Collier, N. (2001), “Machine learning for information extraction from XML markup-up text on the Semantic Web”, Proc. Semantic Web Workshop at the Tenth International Conference on the World Wide Web (WWW’10), Hong Kong, May 1-5, pp. 29-36.[pdf]
  39. Kawtrakul, A., Collier, N., Takeuchi, K., Ono, K., Suktarachan, M., Chanlekha, H. and Waiyamai, K. (2001), “Collaboration on named entity discovery in Thai agricultural texts, Proc. 8th International Workshop on Academic Information Networks and Systems (WAINS-8), National Institute of Informatics, Karuizawa, October 10-12, pp. 77-82.
  40. Collier, N., Nobata, C., and Tsujii, J., (2000), "Extracting the names of genes and gene products with a Hidden Markov Model", Proc. International Conference on Computational Linguistics, (COLING'2000), Saarbrucken, Germany, July 31st – August 4th, pp. 201-207. [pdf][bio1 named entity data]
  41. Collier, N. H., Mima, H., Lee, S., Ohta, T., Tateishi, Y., Yakushiji, A. and Tsujii, J. (2000), "The GENIA project: information access to molecular-biology texts", Invited paper, Proc. 7th International Workshop on Human Interface Technology 2000 (IWHIT'2000), University of Aizu, Aizu-Wakamatsu, Japan, November 9-10, pp. 53-54.
  42. Nobata, C., Collier, N. H. and Tsujii, J. (2000), "Comparison between tagged corpora for the named entity task", Proc.Workshop on Comparing Corpora (at ACL'2000), Kilgarriff, A. and Berber Sardinha, T. (eds.), Hong Kong University of Science and Technology, October 7th, pp. 20-27.[pdf]
  43. Tateishi, Y., Ohta, T., Collier, N. H., Nobata, C. and Tsujii, J. (2000), "Building an annotated corpus from biology research papers", Proc. Workshop on Semantically Annotated Corpora (at COLING'2000), Saarbrucken, Germany, August. [pdf]
  44. Collier, N., Park, H., and Tsujii, (1999), "Progress on human-computer interaction in the GENIA project on the Internet", Proc. Natural Language Pacific Rim Symposium (NLPRS'99), Beijing, China, November 5-7, pp.443-446.
  45. Nobata, C., Collier, N.., and Tsujii, J. (1999), "Automatic term identification and classification in biology texts", Proc. Natural Language Pacific Rim Symposium (NLPRS'99), Beijing, China, November. 5-7, pp.369-374. [pdf]
  46. Jones, G., Sakai, T., Collier, N., Kumano, A., Sumita, K. (1999), "Exploring the use of machine translation resources for English-Japanese cross-language information retrieval", Proc. Machine Translation Summit VII, Workshop on Machine Translation for Cross Language Information Retrieval, Singapore, September 13-17.
  47. Jones, G., Sakai, T., Collier, N.., Kumano, A., Sumita, K., (1999), "A comparison of query translation methods for English-Japanese cross-language information retrieval", Proc. ACM Special Interest Group on Information Retrieval (SIGIR'1999), San Francisco, USA, August 15-17.
  48. Ibushi, K., Collier, N. H., and Tsujii, J. (1999), "Classification of MEDLINE abstracts", Proc. Genome Informatics Workshop 1999, Asai, K., Miyano, S. and Takagi, T. (eds), Universal Academic Press Inc., Ebisu, Tokyo, December 14-15, pp.290-291.
  49. Imai, H., Collier, N. H., and Tsujii, J. (1999), "A combined query expansion approach for information retrieval", in Proc. Genome Informatics Workshop, Asai, K., Miyano, S. and Takagi, T. (eds), Universal Academic Press Inc., Ebisu, Tokyo, December 14-15, pp. 292-293.
  50. Ohta, T., Tateishi, Y., Collier, N. H., Nobata, C., Ibushi, K., Tsujii, J. (1999), "A semantically annotated corpus from MEDLINE abstracts", Proc. Genome Informatics Workshop 1999, Asai, K., Miyano, S. and Takagi, T. (eds), Universal Academic Press Inc., Ebisu, Tokyo, December 14-15, pp.294-295.
  51. Collier, N., Park, H., Ogata, N., Tateishi, Y., Nobata, C., Ohta, T., Sekimizu, T., Imai, H., and Tsujii, J., "The GENIA project: corpus-based knowledge acquisition and information extraction from genome research papers", Proc. Annual Meeting of the European Association for Computational Linguistics (EACL-99), Bergen, Norway, June 8-12, pp.271-272. [pdf] 
  52. Hishiki, T., Collier, N. H., Nobata, C., Okazaki-Ohta, T., Ogata, N., Sekimizu, T., Steiner, R., Park, H.S., and Tsujii, J. (1998), "Developing NLP tools for genome informatics: an information extraction perspective", Proc. Genome Informatics Workshop, Ebisu, Tokyo, pp. 81-90, Miyana, S. and Takagi, T. (eds), Universal Academic Press, Inc., December 10-11.[pdf]
  53. Collier, N. , Hirakawa, H. and Kumano, A. (1998) "Machine translation vs. dictionary term translation - a comparison for English-Japanese news article alignment", Proc. COLING-ACL'98, University of Montreal, Canada, August 10-14, pp.263-267.[pdf]
  54. Collier, N., Ono, K. and Hirakawa, H. (1998) "An experiment in hybrid dictionary and statistical sentence alignment", Proc. COLING-ACL'98, University of Montreal, Canada, August 10-14, pp.268-274. [pdf]
  55. Collier, N.and Hirakawa, H. (1997) "Acquisition of English-Japanese proper nouns from noisy-parallel newswire articles using Katakana matching", Proc. Natural Language Pacific Rim Symposium (NLPRS-97) , Phuket, Thailand, December 2-4, pp.309-314.
  56. Collier, N. (1997) "Large-scale associative memory for word sense disambiguation", Proc. Natural Language Pacific Rim Symposium (NLPRS-97) , Phuket, Thailand, December 2-4, pp.189-194.
  57. Collier, N. (1997), "Convergence time characteristics of an associative memory for natural language processing", in Proc. International Joint Conference on Artificial Intelligence (IJCAI-97), Nagoya, Japan, August 23-29, pp.1106-1111.
  58. Collier, N. (1996) "Storage of natural language sentences in a Hopfield network", Proc. International Conference on New Methods in Natural Language Processing (NeMLaP-2), Bilkent University, Ankara, Turkey, September 16-18.
  59. Collier, N. (1996) "An analysis of the Hopfield memory for storage and analysis of natural language sentences", Proc. Florida Artificial Intelligence Research Symposium (FLAIRS-96) , Florida, USA, May 20-22.
  60. Collier, N.(1995) "A heuristic tool for contextual meta-knowledge acquisition", Proc. 3rd International Conference on Statistical Analysis of Textual Data (JADT-95), Rome, Italy, December 11-13.
  61. Collier, N. (1995) "Contextual meta-knowledge acquisition from corpora", Proc. Recent Advances in Natural Language Processing (RANLP), Tzigov Chark, Bulgaria, September 14-16.

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AI in Medicine

JMIR

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Int. J. Med. Inf.

J. Biomedical Inf.

BMC Medical Inf. & Decision Making

BMC Biomedical Semantics

Language Resources and Evaluation


Applied Ontology

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