Projects

  • BioCaster (2006 - present)  # Infectious disease detection and tracking from newswire [web site]
Reference: Collier, N. Doan, S., Kawazoe, A., Matsuda Goodwin, R., Conway, M., Tateno, Y., Ngo, Q., Dien, D., Kawtrakul, A., Takeuchi, K., Shigematsu, M. and Taniguchi, K. (2008), “BioCaster: detecting public health rumors with a Web-based text mining system”, Bioinformatics, 24(24):2940-2941, Oxford University Press, DOI: 10.1093/bioinformatics/btn534. [html] [pubmed]
  • ZAISA (2003 - 2006)  # Zone Analysis in Scientific Articles [web site]
Reference: Mizuta, Y., Korhonen, A., Mullen, T. and Collier, N. (2006), “Zone analysis in biology articles as a basis for information extraction”, International Journal of Medical Informatics, Elsevier, 75(6): 468-487. [pubmed]
  • PASBio (2002 - 2005)  # Predicate Argument Structures for Biology [web site]
Reference: Wattarujeekrit, T., Shah, P. and Collier, N. (2004), “PASBio: predicate-argument structures for event extraction in molecular biology”, BMC Bioinformatics, 5:155, DOI: 10.1186/1471-2105-5-155. [pdf][pubmed][PASBio data]
  • PIA (2000 - 2004) # Portable Information Access project [web site]
Reference: Collier, N. (2001), “Machine learning for information extraction from XML markup-up text on the Semantic Web”, Proc. Semantic Web Workshop at the Tenth International Conference on the World Wide Web (WWW’10), Hong Kong, May 1-5, pp. 29-36. [pdf]

Subpages (4): BioCaster PASBio PIA ZAISA