2009

B.A. McKinney, J.Guo, J.E. Crowe, Jr., and D. Tian. Capturing the spectrum of interaction effects in genetic association studies by simulated evaporative cooling network analysis. PLoS Genetics 2009, 5(3): e1000432. doi:10.1371/journal.pgen.1000432. open access.

B.A. McKinney. Informatics approaches for identifying biologic relationships in time series data. Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology (WIREs Nanomed. Nanobiotechnol.) 2009, 1:60-68. pdf

D. M. Reif, A. A. Motsinger, B. A. McKinney, J. E. Crowe, Jr., J.H. Moore.  Integrated analysis of genetic and proteomic data identifies biomarkers associated with adverse events following smallpox vaccination. Genes and Immunity. 2009, 10:112-119. abstract

P. F. Wright, A. P. Durbin, S. S. Whitehead, M. R. Ikizler, S. Henderson, J. E. Blaney, B. Thumar, S. Ankrah, S. Mehta, M. T. Rock, S. M. Yoder, B. A. McKinney, B. R. Murphy, and A. C. Schmidt.  The dengue virus type 4 vaccine candidate rDEN430-4995 is highly attenuated, safe, and immunogenic in healthy adult volunteers,. Am. J. Trop. Med. Hyg. 2009, doi:10.4269/a jtmh.2009.09-0131.

2008

B.A. McKinney, D. Tian. Grammatical immune system evolution for reverse engineering nonlinear dynamic Bayesian models. Cancer Informatics. 2008, 6:433-447. open access

D. M. Reif, B.A. McKinney, A.A. Motsinger, S.J. Chanock, K.M. Edwards, M.T. Rock, J.H. Moore, J. E. Crowe, Jr. Genetic basis for adverse events following smallpox vaccination. Journal of Infectious Diseases. 2008, 198:16-22. pdf

N.L. Kallewaard, B.A. McKinney, Y. Gu, A. Chen, B.V. Venkataram, J.E. Crowe, Jr. Functional maturation of the human antibody response to rotavirus. The Journal of Immunology. 2008, 180:3980-3989. pdf

F. Bibollet-Ruche, B. A. McKinney, F.H. Wagner, A. Duverger, A.A. Ansari, O. Kutsch.  Antibody-mediated activation of chimpanzee T cells via the TCR/CD3 pathway is a function of the anti-CD3 antibody isotype. Journal of Virology. 2008, 82:10271-10278. abstract

J. Xie, P.S. Crooke, B.A. McKinney, J. Soltman, S.J. Brandt. A computational model of quantitative chromatin immunoprecipitation (ChIP) analysis. Cancer Informatics. 2008, 4:137-145. pdf

W. S. Bush, T. L. Edwards, S. M. Dudek, B. A. McKinney, and M.D. Ritchie. Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction. BMC Bioinformatics. 2008, 9:238. open access

S. Faley, K. Seale, J. Hughey, D. Schaffer, S. VanCompernolle, B.A. McKinney, F. Baudenbacher, D. Unutmaz, and J.P. Wikswo. Microfluidic platform for real-time signaling analysis of multiple single T cells in parallel. Lab on a Chip . 2008, 8:1700-1712. abstract

2007

B.A. McKinney, D. M. Reif, B. C. White, J. E. Crowe Jr., J. H. Moore. Evaporative cooling feature selection for genotypic data involving interactions. Bioinformatics 2007, 23: 2113-2120. pdf

B.A. McKinney, N.L. Kallewaard, J.E. Crowe Jr., J. Meiler. Using the natural evolution of a rotavirus-specific human monoclonal antibody to predict the complex topography of a viral antigenic site. Immunome Research. 2007, 3:8. open access

2006

B.A. McKinney, D. M. Reif, M. T. Rock, K. M. Edwards, S. F. Kingsmore, J. H. Moore, J. E. Crowe Jr. Cytokine expression patterns associated with systemic adverse events following smallpox immunization. Journal of Infectious Diseases. 2006, 194(4): 36092. free pubmed central

B.A. McKinney, J. E. Crowe Jr., H. U. Voss, P. S. Crooke, N. Barney, J. H. Moore. Hybrid grammar-based approach to nonlinear dynamical system identification from biological time series. Physical Review E. 2006, 73: 021912. pubmed

D. M. Reif, A. Motsinger, B. A. McKinney, J. E. Crowe, Jr., J. H. Moore. Feature selection using random forests for the integrated analysis of multiple data types. Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. 2006, pp. 171-178. pdf

B.A. McKinney, D. M. Reif, M. D. Ritchie, J. H. Moore. Machine learning for detecting gene-gene interactions. Applied Bioinformatics. 2006, 5(2): 77--88. pdf

2004

B.A. McKinney, M. Dunn, D. K. Watson, J. G. Loeser. N identical particles under quantum confinement: a many-body dimensional perturbation theory calculation. Annals of Physics. 2004, 310: 56. link

B.A. McKinney, M. Dunn, D. K. Watson. Beyond mean-field results for Bose-Einstein condensates at interaction strengths near Feshbach resonances: A many-body dimensional perturbation theory calculation. Physical Review A. 2004, 69: 043611.

2002

B.A. McKinney, D. K. Watson. Bose-Einstein condensation in variable dimensionality. Physical Review A. 2002, 65: 33604.

2000

B.A. McKinney, D. K. Watson. Semiclassical dimensional perturbation theory for two electrons in a D-dimensional quantum dot. Physical Review B. 2000, 61: 4958.

1999

D. K. Watson, B.A. McKinney. An improved large-N limit for Bose-Einstein condensates from dimensional perturbation theory. Physical Review A. 1999, 59: 4091.