A Genomic Reappraisal of Symbiotic Function in the Aphid/Buchnera Symbiosis: Reduced Transporter Sets and Variable Membrane Organisations. Charles H, Balmand S, Lamelas A, Cottret L, Pérez-Brocal V, Burdin B, Latorre A, Febvay G, Colella S, Calevro F, Rahbé Y. Plos One. 2011 CycADS: an annotation database system to ease the development and update of BioCyc databases. Vellozo A, Véron A, Baa-Puyoulet P, Huerta-Cepas J, Cottret L, Febvay G, Calevro F, Rahbé Y, Douglas AE, Gabaldon T, Sagot M-F, Charles H, Colella S. Accepted in DATABASE. 2O11 Genome sequence of the pea aphid Acyrthosiphon pisum. International Aphid Genomics Consortium. Plos Biology. 2010 8(2) Graph based analysis of the metabolic exchanges between two co-resident intracellular symbionts, Baumannia cicadellinicola and Sulcia muelleri, with their insect host, Homalodisca coagulata Cottret L, Milreu P, Acuña V, Marchetti-Spaccamela A, Stougie L, Charles H, Sagot M-F. PLOS COMPUTATIONAL BIOLOGY. 2010 6(9) MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks. Cottret L, Wildridge D, Vinson F, Barrett MP, Charles H, Sagot MF, Jourdan F. Nucleic Acids Res. 2010 Graph methods for the investigation of metabolic networks in parasitology Cottret L and Jourdan F. Parasitology, 2010 6:1-15 Use of reconstituted metabolic networks to assist in metabolomic data visualization and mining Jourdan F, Cottret L, Huc L, Wildridge D, Scheltema R, Hillenweck A, Barrett M P, Zalko D, Watson D G and Debrauwer L, Metabolomics, 2010 Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum Brinza L, Viñuelas J, Cottret L, Calevro F, Rahbé Y, Febvay G, Duport G, Colella S, Rabatel A, Gautier C, Fayard JM, Sagot MF, Charles H, C R Biol, 2009, 332, 1034-1049 Deciphering the connectivity structure of biological networks using MixNet. Picard F, Miele V, Daudin JJ, Cottret L, Robin S., BMC Bioinformatics, 2009 Jun 16;10 Suppl 6:S17. Enumerating Precursor Sets of Target Metabolites in a Metabolic Network. Cottret L, Milreu P-V, Acuna V, Marchetti-Spaccamela A, Viduani-Martinez F, Sagot M-F, Stougie L. WABI 2008, Springer-Verlag, Lecture Notes in Bioinformatics, 2008 vol. LNBI 5251 pp.233-244. An introduction to metabolic networks and their structural analysis. Lacroix V, Cottret L, Thébault P, Sagot MF. IEEE/ACM Trans Comput Biol Bioinform. 2008 Oct-Dec;5(4):594-617. Review. Metabolic network visualization eliminating node redundance and preserving metabolic pathways. Bourqui R, Cottret L, Lacroix V, Auber D, Mary P, Sagot MF, Jourdan F. BMC Syst Biol. 2007 Jul 3;1:29. |  |