Link

Metabolomics.JP: Wiki-based database for metabolism
KEGG: Kyoto Encyclopedia of Genes and Genomes
The All-Species Living Tree Project: Reconstruction of separate and curated 16S and 23S rRNA datasets and trees spanning all sequenced type strains of the hitherto classified species of Archaea and Bacteria
Horizontal Gene Transfer Database
PGTdb: The Prokaryotic Growth Temperature Database
HAMAP: High-quality Automated and Manual Annotation of microbial Proteomes
Network Analysis Tools (NeAT): A series of modular computer programs specifically designed for the analysis of biological networks
University of Minnesota Biocatalysis/Biodegradation Database (including a biochemical periodic table and a rule-based pathway prediction system)
SABIO-RK: Search for kinetic parameters of metabolic reactions
Trex-online: Reconstructing and visualizing phylogenetic trees and reticulation networks
Interaction Web DataBase: A database for ecological networks such as food webs and plant-pollinator networks
Database and software in TUHH - Institute of Bioprocess and Biosystems Engineering (including metabolic network data in (Ma and Zeng, 2003))
GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world.
NetSeed: A software package for identifying the seed sets of networks