left: a defector being wiped out in a scale-free wold of cooperators (with Franciso C. Santos, 2004)
center: stern-judging, a social normal of cooperation & punishment (with Fabio Chalub & Francisco C. Santos, 2006)
right: virotherapy: a tumor (dark spots) is fighting a cancer (brighter spots) in a virtual 3D-organism (with Carlos L. Reis & David Dingli, 2008)
I have been working in four main areas of research in complex systems:
A. Cooperation between individuals in the framework of Evolutionary Game Theory.
B. Global Optimization (directly though not exclusively related with research in quantum systems)
C. Dynamics of Epidemics.
D. Tumor scaling and evolutionary dynamics.
Publications (updated : feb / 2012 )
A. 149.
Co-evolution of pre-play signaling and cooperation
Francisco C. Santos, Jorge M. Pacheco, Brian Skyrms
in Advances in Artificial Life, ECAL 2011:
Proceedings of the 11th European Conference on the Synthesis and Simulation of Living Systems,
T. Lenaerts, M. Giacobini, H. Bersini, P. Bourgine, M. Dorigo and R. Doursat, eds.
MIT Press, 2011
[e-link]
A. 148.
Evolutionary dynamics of collective action
Jorge M. Pacheco, Francisco C. Santos, Max O. Souza, Brian Skyrms
in Advances in Artificial Life, ECAL 2011:
Proceedings of the 11th European Conference on the Synthesis and Simulation of Living Systems,
T. Lenaerts, M. Giacobini, H. Bersini, P. Bourgine, M. Dorigo and R. Doursat, eds.
MIT Press, 2011
[e-link]
A. 147.
From Local to Global Dilemmas in Social Networks
Flávio L. Pinheiro, Jorge M. Pacheco, Francisco C. Santos
PLoS-ONE (2012) (accepted)
[e-link]
A. 146. Evolutionary dynamics of collective action when individual fitness derives from group decisions taken in the past
João A. Moreira, Flávio L. Pinheiro, Ana Nunes, Jorge M. Pacheco
Journal of Theoretical Biology 298 (2012) 8–15
[e-link]
D. 145. Dynamics of mutant cells in hierarchical organized tissues
Benjamin Werner, David Dingli, Tom Lenaerts, Jorge M. Pacheco, Arne Traulsen
PLoS-Computational Biology 7 (2011) 10022900
[e-link]
A. 144. Evolutionary Dynamics of Climate Change under Collective-Risk Dilemmas
Francisco C. Santos, Victor V. Vasconcelos, Marta D. Santos, Pedro B. Neves, and Jorge M. Pacheco
M3AS: Mathematical Models and Methods in Applied Sciences
(2012, Special Issue on Mathematics and Complexity in Human and Life Sciences)
[e-link]
D. 143. Evolutionary Dynamics of Mutations in Hematopoietic Stem Cells and Beyond
David Dingli, Arne Traulsen and Jorge M. Pacheco
Stem Cells and Cancer Stem Cells, Volume 3, Chapter 11 (2012, accepted)(Springer Science)
[e-link]
A. 142. Role of diversity in the evolution of cooperation
Francisco C. Santos, Flávio L. Pinheiro, Tom Lenaerts and Jorge M. Pacheco
Journal of Theoretical Biology XXX (2011) YYY-ZZZ.
[e-link]
A. 141. Escaping the tragedy of the commons via directed investments
Jeromos Vukov, Francisco C. Santos and Jorge M. Pacheco
Journal of Theoretical Biology 287 (2011) 37-41.
[e-link]
A. 140. Risk of collective failure provides an escape from the tragedy of the commons
Francisco C. Santos and Jorge M. Pacheco
Proc Natl Acad Sci USA (Online 9th June, 2011).
[e-link]
D. 139. Stochastic dynamics and the evolution of mutations in stem cells
David Dingli and Jorge M. Pacheco
BMC Biology 2011, 9:41.
[e-link]
D. 138. Explaining the in vivo and in vitro differences in leukemia therapy
T. Lenaerts, F. Castagnetti, A. Traulsen, J.M. Pacheco, G. Rosti and D. Dingli
Cell Cycle 10 (2011) 1540-1544.
[e-link]
A. 137. Incipient Cognition Solves the Spatial Reciprocity Conundrum of Cooperation
Jeromos Vukov, Francisco C. Santos, Jorge M. Pacheco
PLoS One 6 (2011) e17939.
[e-link]
A. 136. Co-evolution of pre-play signaling and cooperation
Francisco C Santos, Jorge M Pacheco, Brian Skyrms
Journal of Theoretical Biology 274 (2011) 30-35
[pdf] ,
[e-link]
A. 135. Selection pressure transforms the nature of social dilemmas in adaptive networks
Sven Van Segbroeck, Francisco C Santos, Tom Lenaerts, Jorge M Pacheco
New Journal of Physics 13 (2011) 013007
[e-link]
A. 134. The Messianic Effect of Pathological Altruism
Jorge M. Pacheco, Francisco C. Santos
in "Pathlogical Altruism" (B. Oakley, A. Knafo, G. Madhavan, David S. Wilson, Edts, Oxford U. Press, 2011)
[pdf]
A. 132. Coevolution of Cooperation, Response to Adverse Social Ties and Network Structure
Sven Van Segbroeck, Francisco C. Santos, Jorge M. Pacheco, Tom Lenaerts
Games 1(3) (2010) 317-337
[e-link]
D. 131. Somatic mutations and the hierarchy of hematopoiesis
Arne Traulsen, Jorge M. Pacheco, Lucio Luzzatto,David Dingli
BioEssays XX (2010) in press
[pdf]
A. 130. Evolutionary dynamics of collective action
Jorge M. Pacheco, Francisco C. Santos, Max O. Souza, Brian Skyrms
in "The Mathematics of Darwin Legacy"
(José Francisco Rodrigues, Fábio Chalub, edts, 2010)
[pdf]
C. 129. Creating metamaterials at the nano-scale
Jorge M. Pacheco, Carlos L. Reis
Actas da Academia de Ciências de Lisboa (2010) in press
[pdf]
*. 128. Minimizing CO2 Emissions in a Computing World
Carlos L. Reis, Jorge M. Pacheco
International Journal On Advances in Software (2010) acepted
[pdf]
C. 127. Adaptive contact networks change disease infectiousness and dynamics
Sven Van Segbroeck, Francisco C. Santos, Jorge M. Pacheco
PLoS Computational Biology 6(8)(2010) e1000895
[e-link]
D. 126. Darwin and the Somatic Evolution of Cancer
Jorge M. Pacheco, David Dingli
Actas da Academia de Ciências de Lisboa (2010) in press
[pdf]
D. 125. Modelling Hematopoiesis in Health and Disease
Diogo Peixoto, David Dingli, Jorge M. Pacheco
Mathematical and Computer Modelling (2010) in press
[pdf]
D. 124. Evolutionary Dynamics of Chronic Myeloid Leukemia
David Dingli, Arne Traulsen, Tom Lenaerts, Jorge M. Pacheco
Genes and Cancer 1, 4 (2010) 309-315
[pdf]
D. 123. Hematotpoietic stem cells and their dynamics
David Dingli, Arne Traulsen, Jorge M. Pacheco
in "Stem Cells: Basics and Applications"
K. D. Deb and S. M. Totey (Edts) (McGraw-Hill, New Delhi, 2009) in press
[pdf]
D. 122. Reproductive fitness advantage of BCR–ABL expressing leukemia cells
Arne Traulsen, Jorge M. Pacheco, David Dingli
Cancer Letters (2010) in press
[pdf] ,
[e-link]
D. 121. Cyclic neutropenia in animals
Jorge M. Pacheco, Arne Traulsen, Tibor Antal, David Dingli
American Journal of Hematology 84 (2009) 258
[pdf] ,
[e-link]
A. 120. Social diversity favors the emergence of cooperative behavior
Francisco C. Santos, Marta D. Santos, Sven Van Segbroeck and Jorge M. Pacheco
Proceedings of the Benelux Conference on Artificial Intelligence (2009)
[pdf] ,
[e-link]
A. 119. Behavioral differences and the evolution of cooperation in adaptive social networks
S. Van Segbroeck, Francisco C. Santos, Tom Lenaerts and Jorge M. Pacheco
Proceedings of the Benelux Conference on Artificial Intelligence (2009)
[pdf] ,
[e-link]
A. 118. Emergence of cooperation in adaptive social networks with behavioral diversity
S. Van Segbroeck, Francisco C. Santos, Tom Lenaerts and Jorge M. Pacheco
in Proceedings of the 10th European Conference on Artifical Life, ECAL 2009, Budapest, Hungary
Kampis, G.; Karsai, I.; Szathmary, E. (Eds.)
Advances in Artificial Life: Darwin Meets von Neumann,
Lecture Notes in Computer Science, vol. 5777, pp.434-441, Springer-Verlag, Berlin, Germany, 2011
[pdf]
[e-link]
A. 117. The coevolution of loyalty and cooperation
S. Van Segbroeck, Francisco C. Santos, Ann Nowé, Tom Lenaerts and Jorge M. Pacheco
Proceedings of the IEEE Congress on Evolutionary Computation (2009) 500-505
[pdf] ,
[e-link]
A. 116. Evolution of Cooperation in Adaptive Social Networks
S. Van Segbroeck, Francisco C. Santos, Arne Traulsen, Tom Lenaerts, Jorge M. Pacheco
n Handbook on Biological Networks
World Scientific Publishing Company, Singapore 2009
Edited by S. Boccaletti, V. Latora, and Y. Moreno
[pdf] ,
[e-link]
*. 115. Hierarchically constrained dynamics and emergence of complex behaviour in nano-hybrids
Luís D. Carlos, Jorge M. Pacheco, Rute A. S. Ferreira, António L. L. Videira
SMALL 6 (2010) 386-390
[pdf] ,
[e-link]
D. 113. Tyrosine kinase inhibitor therapy can cure chronic myeloid leukemia without hitting leukemic stem cells
Tom Lenaerts, Jorge M. Pacheco, Arne Traulsen, David Dingli
Haematologica 95 (2010) 900-907
[pdf] ,
[e-link]
A. 112. Population structure induces a symmetry breaking favoring the emergence of cooperation (open access)
Jorge M. Pacheco, Flávio L. Pinheiro, Francisco C. Santos
PLoS-Computational Biology 5(12) (2009) e1000596
[e-link]
D. 111. Reply. . . Evolutionary game theory: lessons and limitations, a cancer perspective
David Dingli, F. A. Chalub, F. C. Santos, S. Van Segbroeck, Jorge M. Pacheco
British Journal of Cancer 101 (2009) 2062-2063
[pdf] ,
[e-link] ,
[press]
D. 110. In silico evolutionary dynamics of tumor virotherapy
Carlos L. Reis, Jorge M. Pacheco, Matthews K. Ennis, David Dingli
Integrative Biology 2 (2010) 41-45
[pdf] ,
[ESI] ,
[e-link]
[press]
D. 109. Cancer phenotype as the outcome of an evolutionary game between normal and malignant cells
David Dingli, F. A. Chalub, F. C. Santos, S. Van Segbroeck, Jorge M. Pacheco
British Journal of Cancer 101 (2009) 1130–1136
[pdf] ,
[e-link] ,
[press]
A. 108. Evolution of Cooperation under N-person Snowdrift Games
Max O. Souza, Jorge M. Pacheco, Francisco C. Santos
Journal of Theoretical Biology 260 (2009) 581-588
[pdf] ,
[e-link]
D. 107. The allometry of chronic myeloid leukemia
Jorge M. Pacheco, Arne Traulsen, David Dingli
Journal of Theoretical Biology 259 (2009) 635-640
[pdf] ,
[e-link]
D. 106. Modeling the architecture and dynamics of hematopoiesis
David Dingli, Jorge M. Pacheco
Wiley Interdisciplinary Reviews : Systems Biology (2009, accepted)
[pdf] ,
[e-link]
D. 105. Successful Cancer Treatment: Eradication of Cancer Stem Cells
David Dingli, Jorge M. Pacheco
in "Methods of Cancer Diagnosis, Therapy and Prognosis", Vol. 2, 179-191
M. A. Hayat (Editor),
Springer Netherlands (2008)
[pdf] ,
[e-link]
A. 104. Reacting differently to adverse ties promotes cooperation in social networks
Sven Van Segbroeck, Francisco C. Santos, Tom Lenaerts, Jorge M. Pacheco
Physical Review Letters 102 (2009) 058105
Selected for the Virtual Journal of Biological Physics Research 17, 4 (2009) February 15th
[pdf] ,
[e-link] ,
[press]
D. 103. Neutral evolution in paroxysmal nocturnal hemoglobinuria
David Dingli, Lucio Luzzatto, Jorge M. Pacheco
Proceedings of the National Academy of Sciences (USA) 105 (2008) 18496
[e-link]
A. 102. Evolutionary games in self-organizing populations
Arne Traulsen, Francisco C. Santos, Jorge M. Pacheco
in "Adaptive Networks: Theory, Models and Applications"
Thilo Gross & Hiroki Sayama (Edts.)
New England Complex Systems Institute Book Series on Complexity
(Springer N.Y., 2008) (accepted)
[pdf] ,
[e-link]
A. 101. The evolution of prompt reaction to adverse ties
Sven Van Segbroeck, Francisco C. Santos, Ann Nowé, Jorge M. Pacheco, Tom Lenaerts
BMC Evolutionary Biology 8:287 (2008)
[e-link]
D. 100. Cyclic neutropenia in mammals
Jorge M. Pacheco, Arne Traulsen, Tibor Antal, David Dingli
American Journal of Hematology 83 (2008) 920
[pdf] ,
[e-link]
A. 099. Evolutionary dynamics of collective action in N-person stag hunt dilemmas
Jorge M. Pacheco, Francisco C. Santos, Max O. Souza, Brian Skyrms
Proceedings Royal Society B 276 (2009) 315-321
[pdf] ,
[e-link]
A. 098. Social diversity promotes the emergence of cooperation in public goods games
Francisco C. Santos, Marta D. Santos, Jorge M. Pacheco
Nature 454 (2008) 213-216
[pdf] ,
[e-link]
D. 097. Progenitor Cell Self-renewal and Cyclic Neutropenia
David Dingli, Tibor Antal, Arne Traulsen, Jorge M. Pacheco
Cell Proliferation 42 (2009) 330-338
[pdf] ,
[e-link]
D. 096. Dynamics of Hematpoiesis across Mammals
David Dingli, Arne Traulsen, Jorge M. Pacheco
Proceedings Royal Society B275 (2008) 2389-2392
[pdf] ,
[e-link] ,
[press]
D. 095. Chronic Myeloid Leukemia: Origin, Development, Response To Therapy, And Relapse
David Dingli, Arne Traulsen, Jorge M. Pacheco
Clinical Leukemia 2 (2008) 133-139
[pdf] ,
[e-link]
D. 094. Multiple mutant clones in blood rarely coexist
David Dingli, Jorge M. Pacheco, Arne Traulsen
Physical Review E 77(2008) 021915
[pdf] ,
[e-link]
D. 093. Some dynamic aspects of hematopoietic stem-cells
David Dingli, Jorge M. Pacheco
Stem Cell Reviews (2008) (accepted)
[pdf] ,
[e-link]
A. 091. Evolution of cooperation in a population of selfish adaptive agents
Jorge M. Pacheco, Tom Lenaerts, Francisco C. Santos
Lecture Notes in Computer Science 4648 (2007) 535-544
[pdf] ,
[e-link]
A. 090. A Multi-Level Selection Model for the Emergence of Social Norms
Francisco C. Santos, Fabio A. C. C. Chalub, Jorge M. Pacheco
Lecture Notes in Computer Science 4648 (2007) 525-534
[pdf] ,
[e-link]
A. 089. Repeated games and direct reciprocity under active linking
Jorge M. Pacheco, Arne Traulse, Hisashi Ohtsuki, Martin A. Nowak
Journal of Theoretical Biology 250 (2008) 723
[pdf] ,
[e-link]
D. 088. Acquired hematopoietic stem cell disorders and mammalian size
J. Viana Lopes, Jorge M. Pacheco, David Dingli
Blood 110 (2007) 4120-4122
[pdf] ,
[e-link]
D. 087. On the origin of multiple mutant clones in paroxysmal nocturnal hemoglobinuria
Arne Traulsen, Jorge M. Pacheco, David Dingli
Stem Cells 25 (2007) 3081-3084
[pdf] ,
[e-link]
D. 086. Depth of response and outcome in multiple myeloma
David Dingli, Jorge M. Pacheco, Grzegorz S. Nowakowski, Shaji Kumar, Angela Dispenzieri, Suzanne Hayman, Martha Lacy, Dennis Gastineau, Morie Gertz
Journal of Clinical Oncology 25 (2007) 4933-4937
[pdf] ,
[e-link]
D. 085. Ontogenic growth of the haematopoietic stem cell pool in humans
David Dingli, Jorge M. Pacheco,
Proceedings Royal Society B274 (2007) 2479
[pdf] ,
[e-link]
D. 084.Single versus multiple transplants for multiple myeloma: Insights from in vivo and in silico studies
David Dingli, Jorge M. Pacheco, M. A. Gertz,
Blood 108 (2006) 458
[pdf] ,
[e-link]
D. 083. The serum M-spike and transplant outcome in patients with multiple myeloma
David Dingli, Jorge M. Pacheco, Angela Dispenzieri, Suzanne Hayman, Shaji Kumar, Martha Lacy, Dennis Gastineau, Morie Gertz
Blood 108 (2006) 455
[pdf] ,
[e-link]
D. 082. From stem cells to blood: dynamic and architectural aspects of hematopoiesis
David Dingli, A. Traulsen, Jorge M. Pacheco,
Haematologica 92 (2007) 454.
[pdf] ,
[e-link]
D. 081.The size of the human active hematopoietic stem cell pool from birth to adulthood
David Dingli, Jorge M. Pacheco
Haematologica 92 (2007) 369
[pdf] ,
[e-link]
D. 080. Impact of stochastic dynamics on the active hematopoietic stem cell pool
David Dingli, A. Traulsen, Jorge M. Pacheco
Haematologica 92 (2007) 161
[pdf] ,
[e-link]
A. 079. Evolution of norms in a multi-level selection model of conflict and cooperation
Jorge M. Pacheco, F. C. Santos, Fabio A. C. C. Chalub
Electronic Journal of Theoretical Physics 4 (2007) 157
[pdf] ,
[e-link]
D. 078. The serum M-spike and transplant outcome in patients with multiple myeloma
David Dingli, Jorge M. Pacheco, Angela Dispenzieri, Suzanne Hayman, Shaji Kumar, Martha Lacy, Dennis Gastineau, Morie Gertz
Cancer Science 98 (7) (2007) 1035–1040
[pdf] ,
[e-link]
A. 077. Evolutionary Graph Theory: Breaking the symmetry between interaction and replacement
Hisashi Ohtsuki, Jorge M. Pacheco, Martin A. Nowak
Journal of Theoretical Biology 246 (4) (2007) 681-694
[pdf] ,
[e-link]
A. 076. Breaking the symmetry between interaction and replacement in evolutionary dynamics on graphs
Hisashi Ohtsuki, Martin A. Nowak, Jorge M. Pacheco
Physical Review Letters 98 (2007) 108106
Selected for the Virtual Journal of Biological Physics Research 13, 6 (2007) March 15th
[pdf] ,
[e-link]
D. 075. Compartmental Architecture and Dynamics of Hematopoiesis (
David Dingli, Arne Traulsen, Jorge M. Pacheco
PLoS ONE 2(4) (2007) e345
[e-link]
A. 074. Darwin, Evolution and Cooperation
Jorge M. Pacheco
Proceedings of the International Conference Advances in Physical Science,
Aveiro, Portugal, September 2005 (L. D. Carlos, editor)
[pdf] ,
D. 073. In vivo and in silico studies on single versus multiple transplants for multiple myeloma
David Dingli, Jorge M. Pacheco, Angela Dispenzieri, Suzanne Hayman, Shaji Kumar, Martha Lacy, Dennis Gastineau, Morie Gertz
Cancer Science 98 (5) (2007) 734–739
[pdf] ,
[e-link]
D. 072. Stochastic dynamics of hematopoietic tumor stem cells
David Dingli, Arne Traulsen, Jorge M. Pacheco
Cell Cycle 6 (4) (2007) 461-466
[pdf] ,
[e-link] ,
[issue cover]
A. 071. Pairwise Comparison and selection temperature in evolutionary game dynamics
Arne Traulsen, Martin A. Nowak, Jorge M. Pacheco
Journal of Theoretical Biology 246 ( 2007) 522-529
[pdf] ,
[e-link]
D. 070. The Emergence of Tumor Metastases
David Dingli, Franziska Michor, Tibor Antal, Jorge M. Pacheco
Cancer Biology & Therapy 6,3 (2007) 522-529
[pdf] ,
[e-link]
A. 069. Stern-judging : A simple, successful norm which promotes cooperation under indirect reciprocity
Jorge M. Pacheco, F. C. Santos, Fabio A. C. C. Chalub
PLoS Computational Biology 2(12) (2006) e178
[e-link]
A. 068. Coevolution of strategy and structure in complex networks with dynamical linking
Jorge M. Pacheco, Arne Traulsen, Martin A. Nowak
Physical Review Letters 97 (2006) 258103
Selected for the Virtual Journal of Biological Physics Research 13, 1 (2007) January 1st
[pdf] ,
[e-link]
A. 067. Cooperation Prevails when individuals adjust their social ties (open access)
F. C. Santos, Jorge M. Pacheco, Tom Lenaerts
PLoS Computational Biology 2(10) (2006) 1284
[e-link]
D. 066. Allometric scaling of the hematopoietic stem cell pool accross mammals (open access)
David Dingli, Jorge M. Pacheco
PLoS ONE 1 (2006) e2
[e-link]
A. 065. Stochastic payoff evaluation increases the temperature of selection
Arne Traulsen, Martin A. Nowak, Jorge M. Pacheco
Journal of Theoretical Biology 244 (2006) 349-356
[pdf] ,
[e-link]
A. 064. Emergence of Cooperation in Heterogeneous Structured Populations
F. C. Santos, Jorge M. Pacheco, Tom Lenaerts
Proceedings of the 10th Conference on the Simulation and Synthesis of Living Systems
(L. M. Rocha et al., Edts.) MIT Press (2006) 432-437
[pdf] ,
[e-link]
A. 063. Active linking in evolutionary games
Jorge M. Pacheco, Arne Traulsen, Martin A. Nowak
Journal of Theoretical Biology 243 (2006) 437-443
[pdf] ,
[e-link]
A. 062. Stochasticicy and Evolutionary Stability
Arne Traulsen, Jorge M. Pacheco, Lorens Imhof
Physical Review E 74 (2006) 021905
[pdf] ,
[e-link]
A. 061. Stochastic dynamics of invasion and fixation
Arne Traulsen, Martin A. Nowak, Jorge M. Pacheco
Physical Review E 74 (2006) 011909
Selected for the Virtual Journal of Biological Physics Research 12, 3 (2006) August 1st
[pdf] ,
[e-link]
A. 060. Evolutionary Dynamics of Social Dilemmas in Structured Heterogeneous Populations (open access)
Francisco C. Santos, Jorge M. Pacheco, Tom Lenaerts
Proceedings of the National Academy of Sciences, USA 103 (2006) 3490-3494 (Online 16-Feb-2006)
[e-link] ,
[press]
A. 059. The Evolution of Norms
Fabio A. C. C. Chalub, Francisco C. Santos, Jorge M. Pacheco
Journal of Theoretical Biology 241(2) (2006) 233-240 (Online 04-Jan-2006)
[pdf] ,
[e-link]
A. 058. A new route to the evolution of cooperation
Francisco C. Santos, Jorge M. Pacheco
Journal of Evolutionary Biology 19(3) (2006) 726-733
[pdf] ,
[e-link]
A&C. 057. Epidemics spreading and cooperation dynamics on homogeneous small-world networks
Francisco C. Santos, João F. Rodrigues, Jorge M. Pacheco
Physical Review E 72 (2005) 056128
Selected for the Virtual Journal of Biological Physics Research 10 (2005) December 1st
[pdf] ,
[e-link]
A. 056. Graph topology plays a determinant role in the evolution of cooperation
Francisco C. Santos, João F. Rodrigues, Jorge M. Pacheco
Proc. Royal Soc. London B273 (2006) 51-55 (online October 2005)
[pdf] ,
[e-link]
A. 055. Scale-Free networks provide a unifying framework for the Emergence of Cooperation
Francisco C. Santos, Jorge M. Pacheco
Physical Review Letters 95 (2005) 098104
Selected for the Virtual Journal of Biological Physics Research 10 (2005) September 1st
[pdf] ,
[e-link]
A. 054. Network dependence of the dilemmas of cooperation
Jorge M. Pacheco, Francisco C. Santos
Science of Complex Networks: from Biology to the Internet and WWW
AIP Conference Proceedings 776 (2005) pp 90-100 (J. F. F. Mendes, Editor)
[pdf] , [e-link]
C. 053. Recurrent epidemics in small world networks
J. Verdasca, M. M. Telo da Gama, A. Nunes, N. R. Bernardino, Jorge M. Pacheco, M. C. Gomes
Journal of Theoretical Biology 233 (2005) 553-561
[pdf] ,
[e-link]
B. 041. Monte Carlo simulations with first-principles energies
Jorge M. Pacheco, José Luís Martins
Density Functional Theory and its Applications to Materials,
AIP Conference Proceedings 571 (2001) 166
(V. E. van Doren, K. van Alsenoy, P. Geerlings, Edts.)
[pdf] , [e-link]
B. 040. Highly efficient implementation of a Gaussian program to computing total energy of giant molecules
Jorge M. Pacheco, José Luís Martins
Lecture Notes in Computer Science 1981 (2001) 230
[pdf] , [e-link]
Talks / Seminars / Posters / Courses
2011 – Climate change: a risky public goods game (Invited Talk)
Mathematical Methods and Modeling of Biophysical Phenomena, Iguaçu, Brazil
2011 – Epidemiologia em redes complexas (Advanced Lectures Course)
1st Workshop on Game Theory and Evolutionary Dynamics, U. Federal Fluminense, Niteroi, Brazil
2011 – Models of hematopoiesis (PhD Advanced Course)
IMM, Lisbon, Portugal
2010 – Cooperation & trade on Networks of the First Global Age (Invited Talk)
ESF TECT final meeting, Budapest, Hungary
2010 – The math of hematopoiesis (Advanced Course )
BIOMAT IV, Córdoba, Argentina
2010 – Evolutionary dynamics of climate change under the collective risk dilemma (Invited Talk)
BIOMAT 2010, Rio de Janeiro, Brazil
2010 – Adaptive contact networks change disease infectiousness and dynamics (Invited Talk)
BIOMAT 2010, Rio de Janeiro, Brazil
2010 – Creating meta-materials at the nano-scale (MSc Advanced Course )
European Master in Theoretical Chemistry and Computational Modelling , Porto, Portugal
2010 – Apostar no risco para controlar o aquecimento global do planeta (Invited Talk)
Encontros Ciência 2010, FIL, Lisboa, Portugal
2010 – Evolutionary Game Theory of Cooperation (PhD Advanced Course)
Champalimaud Foundation, Lisbon, Portugal
2010 – Modeling (normal and abnormal) hematopoiesis (PhD Advanced Course)
IMM, Lisbon, Portugal
2010 – Evolutionary dynamics of cooperation on adaptive networks (Invited Talk)
Coalitions and Alliances, NimBios, Knoxville, TN, U.S.A.
2009 – Modeling the architecture and dynamics of hematopoiesis (Invited Talk)
"Sainté et systèmes complexes", Centre Jacques Cartier, Lyon, France
2009 – The evolution of group cooperation (Invited Talk)
"The Mathematics of Darwin's Legacy" Complexo Interdisciplinar, University of Lisbon, Portugal
2009 – Coordinating towards a common good (Invited Talk)
"Fairness and the Commons - Socio-Economic Strategies and Resource Dynamics", Venice, Italy
2009 – Evolutionary dynamics of collective action (Invited Talk)
"Evolution of Cooperation - Models and Theories", Laxenburg, Vienna, Austria
2011 – Fundação Champalimaud, Lisboa, Portugal (Talk)
Posters