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| A Semantic Web Primer, 2nd Edition | by Grigoris Antoniou and Frank van Harmelen [March 2008] | Book |
| Foundations of Semantic Web Technologies | by Pascal Hitzler, Sebastian Rudolph, and Markus Kroetzsch [August 2009] | Book |
| Programming the Semantic Web | by Toby Segaran, Colin Evans, and Jamie Taylor [July 2009] | Book |
| Semantic Web For Dummies | by Jeffrey T. Pollock [March 2009] | Book |
| Semantic Web for the Working Ontologist: Modeling in RDF, RDFS and OWL | by Dean Allemang and James Hendler [May 2008] | Book |
| Semantic Web Programming | by John Hebeler, Matthew Fisher, Hebeler, Ryan Blace, and Andrew Perez-Lopez [March 2008] | Book |
| Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences | edited by Christopher J.O. Baker and Kei-Hoi Cheung [December 2006] | Book |
| A Semantic Web Primer for Object-Oriented Software Developers | Introduces Semantic Web languages such as RDF Schema and OWL, and shows how they can be used in tandem with mainstream object-oriented languages | Documentation |
| Cool URIs for the Semantic Web | Guidelines for the effective use of uniform resource identifiers | Documentation |
| Creating interactive web pages using the Exhibit framework | A bachelor thesis focusing on the open source JavaScript framework, Exhibit, which allows users to create data-centric interactive websites | Documentation |
| OWL 2 Overview | Describes the syntaxes for OWL 2, the different kinds of semantics, the available profiles (sub-languages), and the relationship between OWL 1 and OWL 2 | Documentation |
| RDFa in XHTML: Syntax and Processing | W3C's specification for RDFa: A collection of attributes and processing rules for extending XHTML to support RDF | Documentation |
| Representing Classes As Property Values on the Semantic Web | Addresses the issue of using classes as property values in OWL and RDF Schema | Documentation |
| Resource Description Framework | W3C's RDF home page | Documentation |
| Rule Interchange Format Core | W3C's specification of the rule layer of the Semantic Web stack | Documentation |
| Simple Knowledge Organization System | W3C's SKOS reference: a common data model for sharing and linking knowledge organization systems via the Web | Documentation |
| SKOS Primer | W3C's user guide for those who would like to represent their concept scheme using SKOS | Documentation |
| SPARQL Query Language for RDF | W3C's SPARQL specification | Documentation |
| W3C Semantic Web Activity | W3C's Semantic Web home page | Documentation |
| Web Ontology Language | W3C's OWL home page | Documentation |
| Bio-Ontologies: Knowledge in Biology | A forum for discussion of the latest and most cutting-edge research in ontologies and more generally the organization, presentation and dissemination of knowledge in biology | Meeting or Conference |
| SWAT4LS Workshop | Semantic Web Applications and Tools for Life Sciences held on November 28, 2008 | Meeting or Conference |
| National Center for Biomedical Ontology | A group of biologists, clinicians, informaticians, and ontologists who develop innovative technology and methods allowing scientists to create, disseminate, and manage biomedical information and knowledge in machine-processable form | Organization |
| Semantic Systems Biology | A European collaborative group | Organization |
| W3C's Semantic Web Health Care and Life Sciences (HCLS) Interest Group | Has a mission to develop, advocate for, and support the use of Semantic Web technologies for biological science, translational medicine and health care | Organization |
| Adding SPARQL Support to MySQL | Presentation on mapping SPARQL to SQL using SPASQL given by Eric Prud'hommeaux | Presentation |
| Tim Berners-Lee on the Next Web | Video of a talk Tim Berners-Lee gave in February 2009 on building a web for open, linked data | Presentation |
| FOAF | The Friend of a Friend (FOAF) project is creating a Web of machine-readable pages describing people, the links between them and the things they create and do | Project |
| Linked Data Resources | A recommended best practice for exposing, sharing, and connecting pieces of data, information, and knowledge on the Semantic Web using URIs and RDF | Project |
| Semantic Web Activity: Advanced Development | W3C's Semantic Web Development Page | Project |
| The Cancer Genome Atlas | A comprehensive and coordinated effort to accelerate our understanding of the molecular basis of cancer through the application of genome analysis technologies, including large-scale genome sequencing | Project |
| A semantic web approach to biological pathway data reasoning and integration | Describes the use of semantic web technology and description logic for facilitating the integration of molecular pathway data [2006] | Research Publication |
| Biological data integration using Semantic Web technologies | Through a use case of biological data integration, the authors show that current Semantic Web technologies are becoming mature and can be applied to the development of large applications [April 2008] | Research Publication |
| From XML to RDF: how semantic web technologies will change the design of 'omic' standards | Discusses why semantic web technologies, as recommended by the W3C, expand current data standard technology for biological data representation and management [2005] | Research Publication |
| Globally distributed object identification for biological knowledgebases | Describes the syntax, operations, infrastructure compatibility considerations, use cases and potential future applications of Life Science Identifier (LSID) and LSID Resolution System (LSRS) [2004] | Research Publication |
| RDFScape | A plugin for extending software oriented to biological analysis with support for reasoning on ontologies [April 2008] | Research Publication |
| Scaling the walls of discovery: using semantic metadata for integrative problem solving | Creation of a data architecture that leverages semantic mapping of experimental metadata with the twin goals of reducing architectural complexity while providing flexibility, efficiency and more fully characterized data relationships [January 2009] | Research Publication |
| Addressing the problems with life-science databases for traditional uses and systems biology | Addresses issues involved in integration of heterogeneous experimental data, which are stored in numerous life-science databases [June 2006] | Review Article |
| Biological knowledge management: the emerging role of the Semantic Web technologies | Ontologies and Semantic Web technologies are revolutionizing efforts to organize biological knowledge sources into a readily accessible "resourceome" [July 2009] | Review Article |
| Gene Ontology for microbiologists | Trends in Microbiology Special Issue [July 2009] | Review Article |
| Semantic Web for Health Care and Life Sciences: A Review of the State of the Art | Briefings in Bioinformatics Special Issue [March 2009] | Review Article |
| Technology Review: A Smarter Web | by John Borland [March 2007] | Review Article |
| The Promise of Semantic Web Technology | Article by Matthew Dublin on GenomeWeb.com [May 2009] | Review Article |
| Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL | By illustrating the usefulness of a clear, well-defined language semantics, the authors wish to promote a wider understanding of the computer science perspective amongst potential users within the biological community [February 2007] | Review Article |
| BioPortal | A Web-based application for accessing and sharing biomedical ontologies established by the National Center for Biomedical Ontology | Tool |
| Exhibit | Exhibit lets you easily create web pages with advanced text search and filtering functionalities, with interactive maps, timelines, and other visualizations | Tool |
| FaCT++ | Another open source OWL 2 description logic reasoner | Tool |
| Jena | An open source Semantic Web framework for Java that provides an API to extract data from and write to RDF graphs | Tool |
| OWLIM | A high-performance semantic repository developed in Java | Tool |
| Pellet | An open source OWL 2 description logic reasoner that provides standard and cutting-edge reasoning services for OWL ontologies | Tool |
| Protégé | A free, open source ontology editor and knowledge acquisition system | Tool |
| S3DB | The Simple Sloppy Semantic Database is a way to represent information on the Semantic Web without the rigidness of relational/XML schema while avoiding the "spaghetti" of unconstrained RDF stores | Tool |
| Semantic Web Tools | List of tools maintained by the W3C | Tool |
| SINDICE | The Semantic Web Index - monitors, harvests and brings published RDF data together under a coherent umbrella of functionalities and services | Tool |
| Twinkle | A simple GUI interface for working with SPARQL queries | Tool |
| Large Triple Stores | Contains references to signed quotes of deployments of large triples stores rather than predictions of what some software might scale to. | Uncategorized |
| Semantic Web News & Articles on CMS Wire | Various media articles relating to the semantic web | Uncategorized |