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| [1] |
H.D. Kim*, T. Shay*, E.K. O'Shea, and A. Regev, “Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets,” Science, vol. 325, 2009, p. 429. |
| [2] |
H.D. Kim and E.K. O’Shea, “A quantitative model of transcription factor–activated gene expression,” Nature Structural & Molecular Biology, vol. 15, 2008, p. 1192. |
| [3] |
S. Uemura, M. Dorywalska, T.H. Lee, H.D.
Kim, J.D. Puglisi, and S. Chu, “Peptide bond formation destabilizes
Shine–Dalgarno interaction on the ribosome,” Nature, vol. 446, 2007, p. 454. |
| [4] |
T.H. Lee, S.C. Blanchard, H.D. Kim, J.D. Puglisi, and S. Chu, “The role of fluctuations in tRNA selection by the ribosome,” Proceedings of the National Academy of Sciences, vol. 104, 2007, p. 13661. |
| [5] |
H.D. Kim, J.D. Puglisi, and S. Chu, “Fluctuations of transfer RNAs between classical and hybrid states,” Biophysical Journal, vol. 93, 2007, pp. 3575–3582. |
| [6] |
U. Mohanty, A. Spasic, H.D. Kim, and S. Chu, “Ion Atmosphere of Three-Way Junction Nucleic Acid” J. Phys. Chem. B, vol. 109, 2005, pp. 21369–21374. |
| [7] |
M. Dorywalska, S.C. Blanchard, R.L.
Gonzalez, H.D. Kim, S. Chu, and J.D. Puglisi, “Site-specific labeling
of the ribosome for single-molecule spectroscopy,” Nucleic Acids Research, vol. 33, 2005, p. 182. |
| [8] |
S.C. Blanchard*, H.D. Kim*, R.L. Gonzalez*, J.D. Puglisi, and S. Chu, “tRNA dynamics on the ribosome during translation,” Proceedings of the National Academy of Sciences, vol. 101, 2004, p. 12893. |
| [9] |
S.C. Blanchard, R.L. Gonzalez*, H.D. Kim*, S. Chu, and J.D. Puglisi, “tRNA selection and kinetic proofreading in translation,” Nature structural & molecular biology, vol. 11, 2004, pp. 1008–1014. |
| [10] |
X. Zhuang, H. Kim, M.J. Pereira, H.P.
Babcock, N.G. Walter, and S. Chu, “Correlating structural dynamics and
function in single ribozyme molecules,” Science, vol. 296, 2002, p. 1473. |
| [11] |
H.D. Kim, G.U. Nienhaus, T. Ha, J.W.
Orr, J.R. Williamson, and S. Chu, “Mg2+-dependent conformational change
of RNA studied by fluorescence correlation and FRET on immobilized
single molecules,” Proceedings of the National Academy of Sciences, vol. 99, 2002, p. 4284. |
| [12] |
X. Zhuang, T. Ha, H.D. Kim, T. Centner,
S. Labeit, and S. Chu, “Fluorescence quenching: A tool for
single-molecule protein-folding study,” Proceedings of the National Academy of Sciences, vol. 97, 2000, p. 14241. |
| [13] |
T. Ha, X. Zhuang, H.D. Kim, J.W. Orr, J.R. Williamson, and S. Chu, “Ligand-induced conformational changes observed in single RNA molecules,” Proceedings of the National Academy of Sciences of the United States, vol. 96, 1999, p. 9077. | |
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