Useful reviews of fMRI and the brain:
List of review papers with links
basic guide to fMRI for subjects / patients
Conceptual issues
What can neuroimaging tell us about the mind?
To what degree are brain areas specialized for different functions?
Methodological issues
Individual variation in brain anatomy and function - how can we compare individuals?
Functional connectivity
Technical issues - some useful links
Moving between tailarach and mni atlases
Programs for analyzing neuroimaging data - For visualization I recommend Caret
Programs for psychological testing - I recommend Matlab with Psychophysics toolbox