Research ScientistKellis lab Computer Science Dept. MIT (Massachusetts Institute of Technology) AddressMIT Computer Science and Artificial Intelligence Laboratory (CSAIL) 32 Vassar Street, 32D-514, Cambridge, MA 02139.
I completed my PhD in Computer Science (Computational Biology) from Columbia University in New York in August 2008. My advisor was Dr. Christina Leslie.
Recent Talks/PublicationsAn Integrated Encyclopedia of DNA Elements in the Human Genome Ian Dunham, Anshul Kundaje et al. (The ENCODE Project Consortium) Nature 2012 (In Press)
- Analysis of the human regulatory network using ENCODE data
Mark Gerstein*, Anshul Kundaje* et al., Michael Snyder Joint First Author Nature 2012 (In Press)
- Ubiquitous heterogeneity and asymmetry of the chromatin landscape at transcription regulatory elements
Anshul Kundaje*, Sofia KP*, Max Libbrecht*, Cheryl Smith, Debashish Raha, Elliot Winters, Steven Johnson, Michael Snyder, Serafim Batzoglou, and Arend Sidow Genome Research 2012 (In Press)
- ChIP-seq guidelines and practices used by the ENCODE and modENCODE consortia
Stephen G. Landt*, Georgi Marinov*, Anshul Kundaje*, Pouya Kheradpour, et al., Michael Snyder Joint First Author Genome Research 2012 (In Press)
- Linking disease associations with regulatory information in the human genome
Marc Schaub, Alan Boyle, Anshul Kundaje, Serafim Batzoglou, Michael Snyder Genome Research 2012 (In Press)
- Long non-coding RNAs are rarely translated
Balázs Bánfai, Hui Jia, Jainab Khatun, Emily Wood, Brian Risk, Will Gundling, Anshul Kundaje, Harsha Gunawardena, Yanbao Yu, Ling Xie, Krzysztof Krajewski, Brian Strahl, Xian Chen, Peter Bickel, Morgan Giddings, James Brown & Leonard Lipovich Genome Research 2012 (In Press)
- Genome-wide analysis of the binding sites of more than 100 transcription-related factors defines different types of genomic regions with distinct biological properties
Kevin Y. Yip, Chao Cheng, Nitin Bhardwaj, James B. Brown, Jing Leng, Anshul Kundaje, Joel Rozowsky, Ewan Birney, Peter J. Bickel, Michael Snyder and Mark Gerstein Genome Biology 2012 (In Press)
- Genome-wide mapping of the binding sites of 126 human transcription factors (Submitted)
Jie Wang, Jiali Zhuang, Sowmya Iyer, XinYing Lin, Troy Whitfield, Shelley Force, Aldred, Nathan Trinklein, Xianjun Dong, Melissa Greven, Anshul Kundaje, Ewan Birney, Richard Myers, William S. Noble, Michael Snyder, Zhiping Weng Genome Research 2012 (In Press)
- Predictive models of transcription factor binding using ENCODE data
Selected talk at RECOMB Regulatory Genomics/Systems-Biology Meeting, Nov 2010
- A Predictive Model of the Oxygen and Heme Regulatory Network in Yeast [Website], [pdf]
Anshul Kundaje, Xiantong Xin, Changgui Lan, Steve Lianoglou, Mei Zhou, Li Zhang, Christina Leslie. PLoS Computational Biology 4(11): e1000224 doi:10.1371/journal.pcbi.1000224, Nov 2008
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