Alessandro Flammini

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Publications

[40] M. A. Serrano, A. Flammini, and F. Menczer
Modeling Statistical Properties of Written Text
PLoS ONE 4(4): e5372 (2009)

[39] S. Fortunato, M. Bogugna, A. Flammini, and F. Menczer
On Local Estimations of PageRank: A Mean Field Approach
Internet Mathematics, 4, 245-266 (2009)

[38] B. Goncalves, M. R. Meiss, J. J. Ramasco, A. Flammini, F. Menczer
Remembering What We Like: Toward an Agent-Based Model of Web Traffic
ACM Int. Conf. on Web Search and Data Mining -LateBreakingResults (WSDM 09)

[37] M. Barthelemy and A. Flammini

Modeling Urban Streets Patterns
Physical Review Letters 100, 138702 (2008)

[36] M. Barthelemy and A. Flammini
Co-evolution of Traffic and Topology in a Simple Model of City Formation
Networks and Spatial Economics, 9, 401-425, (2009)

[35] M. Meiss, F. Menczer, S. Fortunato, A. Flammini, A. Vespignani
Ranking Web Sites with Real User Traffic
Proc. First ACM Int. Conf. on Web Search and Data Mining (WSDM 08)

[34] A. Flammini and A. Stasiak
On the Natural Classification of Knots II
International Workshop on Knot Theory for Scientific Objects 2007

[33] Y. Burnier, C. Weber, A. Flammini, and A. Stasiak
Local Selection Rules That Can Determine Specific Pathways of DNA Unknotting by Type II DNA Topoisomerases.
Nucleic Acids Research, 35, 5223-5231, (2007)

[32] A. Flammini and A. Stasiak
On the Natural Classification of Knots
Proceeding of the Royal Society A, 463, 569-582 (2007)

[31] S. Fortunato and A. Flammini
Random Walks on Directed Networks: The Case of Page Rank
International Journal of Bifurcation and Chaos, 17, 2343-2353 (2007)

[30] V. Colizza, A. Flammini, M. A. Serrano and A. Vespignani
Detecting Rich-Club Ordering in Complex Networks
Nature Physics 2, 110-115, (2006)

[29] J. R. Banavar, M. Cieplak, A. Flammini, T. H. Hoang, R. D. Kamien, T. Lezon, D. Marenduzzo, A. Maritan, F. Seno, Y. Snir and A. Trovato.
Geometry of Proteins: Hydrogen Bonding, Sterics and Marginally Compact Tubes.
Physical Review E, 73, 031921, (2006).

[28] S. Fortunato, A. Flammini, F. Menczer and A. Vespignani
Topical Interests and the Mitigation of Search Engine Bias.
Proceedings of the National Academy of Sciences 103, 12684-12689, (2006)

[27] S. Fortunato, M. Bogugna, A. Flammini and F. Menczer
How to Make the Top Ten: Approximating PageRank From In-Degree
Proceedings of the Fourth Workshop on Algorithms and Models for the Web (WAW2006) Banff, CA,
Springer series “Lecture Notes in Computer Science”

[26] S. Fortunato, A. Flammini, and F. Menczer
Scale-Free Network Growth by Ranking
Physical Review Letters 96, 218701 (2006)

[25] M. Barthélemy and A. Flammini
Optimal Traffic Networks.
Journal of Statistical Mechanics (2006) L07002

[24] V. Colizza, A. Flammini, A. Maritan and A. Vespignani
Characterization and Modeling of Protein-Protein Interaction Networks
Physica A, 352, 1-27, (2005)

[23] D. Marenduzzo, A. Flammini, A. Trovato, J. R. Banavar and A. Maritan
Physics of Thick Polymers
Journal of Polymer Science. Part B: Polymer Physics 43, 650-679, (2005)

[22] S. Pigolotti, A. Flammini, M. Marsili and A. Maritan
Species Lifetime Distribution for simple Models of Ecology
Proceeding of the National Academy of Science 102, 15747-15731, (2005)

[21] J. R. Banavar, P. De Los Rios, A. Flammini, N. Holter and A. Maritan
Scale-Free Behavior and Universality in Random Fragmentation and Aggregation
Physical Review E, 69, 036123, (2004)

[20] S. Pigolotti, A. Flammini and A. Maritan
Stochastic Model for the Species Abundance Problem in an Ecological Community
Physical Review E, 70, 011916, (2004)

[19] A. Flammini, A. Stasiak and A. Maritan
Simulations of Action of DNA Topoisomerases to Investigate Boundaries and Shapes of Spaces of Knots.
Biophysical Journal, 87, 2698 - 2975, (2004)

[18] A. Vazquez, A. Flammini, A. Maritan and A. Vespignani
Global Protein Function Prediction From Protein-Protein Interaction Networks
Nature Biotechnology 21, 697 - 700, (2003)

[17] F. Bagnoli, F. Cecconi, A. Flammini and A. Vespignani
Short Period Attractors and Non-Ergodic Behavior in the Deterministic, Fixed-Energy Sandpile Model
Europhysics Letters 63, 512 - 518, (2003)

[16] J. R. Banavar, A. Flammini, D. Marenduzzo, A. Maritan and A. Trovato
Geometry of Compact Tubes and Protein Structures
ComplexUs 1, 4 - 13, (2003)

[15] A. Vazquez, A. Flammini, A. Maritan and A. Vespignani
Modeling of Protein Interaction Networks
ComplexUs 1, 38 - 44, (2003)

[14] J. R. Banavar, A. Flammini, D. Marenduzzo, A. Maritan and A. Trovato
Tubes Near the Edge of Compactness and Folded Protein Structures
Journal of Physics: Condensed Matter 15, S1787 - S1796, (2003)

[13] C. Micheletti, F. Cecconi, A. Flammini and A. Maritan
Crucial Stages of Protein Folding Through a Solvable Model: Predicting Target Sites for Enzyme-Inhibiting Drugs
Protein Science 11, 1878 - 1887, (2002)

[12] A. Flammini, J. R. Banavar and A. Maritan
Energy Landscape and Native State Structure of Proteins- a Simplified Model
Europhysics Letters 58, 623 – 629, (2002)

[11] J. R. Banavar, F. Colaiori, A. Flammini, A. Maritan, and A. Rinaldo
Scaling, Optimality and Landscape Evolution
Journal of Statistical Physics 104, 1 – 48, (2001)

[10] R. C. Ball, G. Caldarelli and A. Flammini
Angular Structure of Lacunarity and the Renormalization Group
Physical Review Letters 85, 5134 – 5137, (2000)

[9] J. R. Banavar, F. Colaiori, A. Flammini, A. Maritan, and A. Rinaldo
Topology of the Fittest Transportation Network
Physical Review Letters 84, 4745 – 4748, (2000)

[8] M. R. Swift, F. Colaiori, A. Flammini, A. Maritan and A. Rinaldo
Scaling Relationships in Agglomeration and Annhilation Models
Physical Review Letters 79, 3278 – 3281, (1997)

[7] J. R. Banavar, F. Colaiori, A. Flammini, A. Maritan, A Giacometti and A. Rinaldo
Sculpting of a Fractal River Basin
Physical Review Letters 78, 4522-4525, (1997)

[6] F. Colaiori, A. Flammini, A. Maritan, J. R. Banavar
Analytical and Numerical Study of Optimal Channel Networks
Physical Review E 55, 1298 – 1310, (1996)

[5] A. Rinaldo, A. Maritan, F. Colaiori, A. Flammini, M. R. Swift, R. Rigon, J. R. Banavar and I. Rodriguez Iturbe
On Feasible Optimality
Istituto Veneto di Scienze, Lettere ed Arti: Rapporti e Studi (1996)

[4] A. Maritan, J. R. Banavar, M. Cieplak, F. Colaiori, A. Flammini, A. Giacometti, A. Rinaldo, I. Rodriguez-Iturbe
Statistical Mechanics of River Networks
Proceedings of STATPHYS19, Editor Hao Bailin, World Scientific, Singapore (1996)

[3] A. Maritan, F. Colaiori, A. Flammini, M. Cieplak and J. R. Banavar
Universality Classes of Optimal Channel Networks
Science 272, 984 – 986, (1996)

[2] A. Maritan, A. Rinaldo, F.Colaiori, A. Flammini, R. Rigon, I. Rodriguez-Iturbe and J. R. Banavar
Thermodynamics of Fractal Networks
Physical Review Letters 76, 3364 – 3367, (1996)

[1] A. Flammini, F. Colaiori
Exact Analysis of Peano Basin
Journal of Physics A 29, 6701 – 6708, (1996)


Non-Refereed Publications

[O2] A. Vazquez, A. Flammini, A. Maritan, and A. Vespignani
Reply to “The Art of Gene Function Prediction”
Nature Biotechnology 24, 1475-1476, (2006)

[O1] S. Fortunato, A. Flammini, F. Menczer, and A. Vespignani
Googlearchy or Googlocracy
IEEE Spectrum on line